RNA id: XM_036966925.1


Basic Information

Item Value
RNA id XM_036966925.1
length 1895
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110508238
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34868513 ~ 34888930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCACTGATCAGACAAGTGTCAGTATTCATACCAGTTCCAGATCAACCCCACGTGTGCAAGGTGCACATGTACTTTAAGACACAAGAACTACAGATACAATATCTACCGTTGACTCTATGACTGGAGAGTAACCCGGGAGATCGTTCAACTCCAAAGATGGAGGACATAGACGCCATGTTCACTGACCTGCTGGGAGAGATGGACCTCCTAACACAGAGTCTTGGGTATGAAACGGACTCCTCAGAAATATCATCCAGCAGTTCACAGATAGAAAACAACTTCTCTATTGGGTTCACAGATTTGAAAGAATCTCTAAATGAGCTAGAGGATCACGACCTTGACGCTCTGATGGCTGATCTGGGGTCAGATTTgacggagacagaggagacactgAATGCAGCCAAGACGGGACATGTCCACACACAACAGCACAAGTCTGGCCTCTACACCCCGCAACAAAATGTCCAAGCAcctatcccctcctcctcctcctctctccctcctgaacCCTCTGAACCACTGCTAGCGGGAGAGGCTGAAGCACAAGCCAAAGCCGACAAAATCAAGCTGGCTCTGGAGAAGCTAAAAGAAGCCAAAGTTAAGAAGTTGGTGGTCAAGGTGATGATGAGCGATGGCAGCTCCAAGACACTGATGGTGGACGAGAGACAGACGGTGAGGGACGTGCTGGATAATCTGTTTGAGAAGACCCACTGCGACTGCAGCATGGACTGGAGCCTATGTGAGACCAACCCTGAGCTGCAGGCTGAAAGGGGGTTTGAAGACCATGAATATCTGGTGGAGTCTCTTTCTGCATGGACACGAGACAGTGAAAACAAAATCCTTTTCCTTCTGAGACCCAACAAATATCTCCTCTTCAAAGACCCCCAGATATTCTACCTATGGAAGAAACATAAACAATTTATGAATGAGATAAAAGAATGCCATAAGGAACTTCTGCTAAAGGAACATTTTGAGGGTCCGTCTGTCATCGTCCCAGACCTGGAGGGGCCGCTGTATCTGAGGGAGGACAGGAAGAAATCGTGGAAACGTCGCTACTTCCTGCTCAGAGCTTCTGGGATATACTACGTGCCTAAAGGAAAGACAAAGACATCCAGGGACCTGGCGTGCTTCATTCAGTTTGACAAAGTCAACATCTACACCACCACTGATTACAAACAGAAGTACAAAGCACCCACTAACTTCTGCTTCATCCTCAAGCATCCTCAGATCCAGAAGGAGTCCCAGTACATCAGGTTCCTGTGTTGTGACGATGagcacactctctccctctgggtCAACTCCATCAGAGTAGCCAAGTATGGGGCCACCCTGTATCACAACTATCAGAAGGCAGTGAGGAGAGCCTTAACCACCACCTCCACTCTGCATGTGACCAGTCTGCCTGTCTCCAGCCCTCCCACACATTCTACTGGGCACatagCAACAGTGAGGGCCAATGGACATCCTGATCAGGACGACTTCTCTGAACCGCCCCCAGACTTTATTCCCCCGCCCCCTCCTGGGTGGAGCTCTGGGGTCTAGGGATGGAGCTCCGCCCACTCACCCATGACTTCTGTAGAGGACGTtctcaacctacctacctacagacAGACAAGCCCAGTGTTCATGAACCAGAGCGATGCTTTTAAAAAATAGCATCTCGGGAGGTGACAGGCCCTGCTCCAATAATTCAAAATGCATTCTTCCTTTCTTCCCTCCTTCTTTAAGTAACTGATCTGACAAGATATGATTGGACAACGCAATGCAGTGGAGACATTTCCAAACCAGTGACTGatgggaaaggggggatacctagtcagttgaatagggaaaggggggatacctagtcagttgaatagggaaaggggggatacctagtcagttgtatagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437574 lncRNA downstream 1270 34866665 ~ 34867243 (-) True G2131816
TU2437565 lncRNA downstream 13976 34853560 ~ 34854537 (-) True G2131809
TU2437484 lncRNA downstream 183245 34684981 ~ 34685268 (-) True G2131736
TU2437483 lncRNA downstream 186031 34682278 ~ 34682482 (-) True G2131735
TU2437442 lncRNA downstream 248589 34619644 ~ 34619924 (-) True G2131702
TU2437605 lncRNA upstream 2955 34891885 ~ 34892090 (-) True G2131836
TU2437620 lncRNA upstream 47578 34936508 ~ 34945229 (-) True G2131851
TU2437623 lncRNA upstream 67729 34956659 ~ 34967039 (-) True LOC110509081
TU2437644 lncRNA upstream 88375 34977305 ~ 34977703 (-) True G2131873
TU2437651 lncRNA upstream 102080 34991010 ~ 34991812 (-) True G2131880
XM_036966651.1 mRNA downstream 43978 34812717 ~ 34824535 (-) False LOC110509075
XM_036966649.1 mRNA downstream 43984 34812717 ~ 34824529 (-) False LOC110509075
XM_036966652.1 mRNA downstream 43984 34812717 ~ 34824529 (-) False LOC110509075
XM_036966653.1 mRNA downstream 43984 34816267 ~ 34824529 (-) True LOC110509075
XM_036966439.1 mRNA downstream 61699 34773755 ~ 34806814 (-) True LOC110509071
XM_021590037.2 mRNA upstream 22165 34911095 ~ 34921612 (-) False anxa13l
XM_021590038.2 mRNA upstream 22165 34911095 ~ 34921612 (-) True anxa13l
XM_036966584.1 mRNA upstream 36456 34925386 ~ 35056378 (-) False LOC110509081
XM_021590044.2 mRNA upstream 203292 35092222 ~ 35105019 (-) True LOC110509086
trnaw-cca-62 mRNA upstream 243625 35132555 ~ 35132626 (-) True trnaw-cca-62
TU2437347 other downstream 350384 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 350384 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 382337 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 810243 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 825948 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 1116559 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1127132 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1134850 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1134860 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1335283 36224213 ~ 36225379 (-) True G2132971

Expression Profile