RNA id: XM_021590037.2


Basic Information

Item Value
RNA id XM_021590037.2
length 2467
RNA type mRNA
GC content 0.44
exon number 11
gene id anxa13l
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34911095 ~ 34921612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGCTGGTGACGTCAGCTATGCTGGCAGGGCTGGTCCTTCGTGTGCAGAATCGACTTCTTAAAGGGTGACTAGCGAGGAGGACGTTGACTGACCCGACACTGTACATCATCTTCGCTGGATTGAAAACAAGAGTCTGCAACATGGGCAACGTCCAACCAACTATTACCCCCTATGATGATTTCGATGTTGTGGCTGATATCAAGGCCATTCGCAAATCCTGCAAAGGTTTGGGGACGGATGAGGAGGCCATCATTGAGATCCTGGCCAATCGTTCATCAGCACAGCGCTTGGAAATCAAGCACGCATACTTTGAGAAGTATGACGACGAGTTGGAGGAGGTGTTGAAGAAGGAGCTGACTGGTAGTTTTGAGATGGCCATTGTGGCTATGCTAGATCCGCCCCACATCTACTCTGCCAAGGAGCTGAGGAAGGCCATGAAAGGGGCGGGCACCGACGAGGCCGTTCTGGTGGAGATCCTGTGCACCAGCACCAATCAGGAGATCCTGACTTGCCAGGAGGCGTATGCCCAGGTGAACGAACGTGACCTTGTGGCTGACATTGAGGATGACACCAGTGGAGATGTCAAGAACCTCCTGATATCTCTTCTGCAGGCTAACCGAGATGAAGGCTTCGAGGTGGACGAGGGACTGGCCGAGCAGGATGCGACCGCTATGTTTGAGGCAGGAGAGGGTCGTTTTGGAACGGACGAGTCCACCTTCAGTTACATTTTGACACACAGGAACTACCTGCAGCTTCAGGCCACCTTCAAGATCTATGAGCAGCTCTCTGGGACAGAGATCCTGGATGCCATTGACAACGAAGCCACTGGGACCTTAAAGGAGTGTTACATCACCCTGGTGCGTTGTGCCAAAAACCCTCAGCTCTATTTTGCCCGTCGCCTGAACGCCGCAATGAAAGGGGCGGGCACTGACGAAGACACGCTCATCCGCATCATTGTTGGTCGCTCAGAGtTTGACCTGGAGACCATTAAGGAGATGTACCTGGAGAAGTATGATGTTCCTCTGAAAGAAGCTCTGAGCTCTGAGTGTGGAGGAGACTTCAAACGTCTCCTACTGGAGATCCTGCACTAAGACCCCTGTTtgtttctctttctgttcctCTTATTCTTTATCCTTCTTTGACAGTTACACTCCTAAAACACCTGTCTTCTAATACTTCtacctctctcatcctcttccttctctccggCTCTGACTGCAGCATGGACCAAAAACCAACCACACCGTCATGTGTTACTAACACAGACACAAGATGTCACTAACTTCTACATTGAGTTATGAACAGAAGACTGCCAAGTATCCTGGGCCGTATACTGGATAATGACTTAAAAGTCATAGACCTGAATTATAAATACTGTTCTTAAAACTGAATAACATATTGATATACTATGTTGATTATCACACATTCCACAGTTAGGCTCTTCTTACATACAGTAATGTAACCAACTATTTGTCATTCTTTTTTTTCCCTCTTTTCTTTATTCAAAGCtgtgggaagtaggggtgctgaaggCGCTGCAACACCCcttggggaaaaaaacaagtCAATTtgctttttttaaaaaaaaacaaaattagTGAACTTTGTCCTTTACTGCTCCTGTATCAGTTGAggagaaatactcctcagcatccCCCTGTTCTTACTCCTTTCTTGTTTGTGGCTGATAGTTGATGTTGGCTGTATCATTAGTTCATACCACGTTTACTGTGTCTACCACATAGATGCCTTGACGAAGCCTTAAAAGATGCCATTTATTTTCTTTCTGCTGCACCACTCAAGCTCCAAGGAATCTCATTGGAAGCTTTCCGGTACATACATGGCTCCATTTTGAATCGAGAAGAGATTAAACATATCTGGCTTAGAATTTCTATCCATCATTAGGATTTTTAACCTGTAGGAAAGaagttgactgtttatagatACCTTTTTAGATCAAAGCCTTCTCTCTTTTGAAATATTTACACTTTGATTGACAATTCCTTTTTTCTTTCTAATAAAACTCAATGGAAAACAGCAGTAGTAACCAATTGAAGTAGTTGATATAAATAAGTGGATGTTAATGCTTTTAAAGAGCAATGGGGGCTCTAAAAATAATATATTAAGGAGGGAATGCACCATAGCATTGATTGTAGTATTTCATCATTTAAAGGAAATGTGCAAATTAATCGTAAGGCTTCAAGTACAATCATGAGCATGTAGTATTAAAGGCAACTGCTGTATGGTAATATTACATGGCCTCCTAAAATGGTATATCAAAAATACCTCTAACTATCTTGTAGTGAGAGTGGGCTTCTGTTGTGTCAGCTATACAGGTGTCAGAACGGTATTGATGGCAACCAGGTCAATGTCAACGACTTGCATTTTGGATGAATGTTATCCTGAACATAGCCAAAGATTTGTGGTTACTGTAAAATATAAATAAAGCATAGCTATATTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437605 lncRNA downstream 19005 34891885 ~ 34892090 (-) True G2131836
TU2437593 lncRNA downstream 35405 34875054 ~ 34875690 (-) True G2131824
TU2437574 lncRNA downstream 43852 34866665 ~ 34867243 (-) True G2131816
TU2437565 lncRNA downstream 56558 34853560 ~ 34854537 (-) True G2131809
TU2437484 lncRNA downstream 225827 34684981 ~ 34685268 (-) True G2131736
TU2437620 lncRNA upstream 14896 34936508 ~ 34945229 (-) True G2131851
TU2437623 lncRNA upstream 35047 34956659 ~ 34967039 (-) True LOC110509081
TU2437644 lncRNA upstream 55693 34977305 ~ 34977703 (-) True G2131873
TU2437651 lncRNA upstream 69398 34991010 ~ 34991812 (-) True G2131880
TU2437681 lncRNA upstream 120354 35041966 ~ 35042678 (-) True G2131906
XM_036966925.1 mRNA downstream 22165 34868513 ~ 34888930 (-) True LOC110508238
XM_036966651.1 mRNA downstream 86560 34812717 ~ 34824535 (-) False LOC110509075
XM_036966649.1 mRNA downstream 86566 34812717 ~ 34824529 (-) False LOC110509075
XM_036966652.1 mRNA downstream 86566 34812717 ~ 34824529 (-) False LOC110509075
XM_036966653.1 mRNA downstream 86566 34816267 ~ 34824529 (-) True LOC110509075
XM_036966584.1 mRNA upstream 3774 34925386 ~ 35056378 (-) False LOC110509081
XM_021590044.2 mRNA upstream 170610 35092222 ~ 35105019 (-) True LOC110509086
trnaw-cca-62 mRNA upstream 210943 35132555 ~ 35132626 (-) True trnaw-cca-62
trnaw-cca-63 mRNA upstream 212251 35133863 ~ 35133934 (-) True trnaw-cca-63
trnaw-cca-64 mRNA upstream 213810 35135422 ~ 35135493 (-) True trnaw-cca-64
TU2437347 other downstream 392966 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 392966 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 424919 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 852825 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 868530 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 1083877 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1094450 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1102168 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1102178 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1302601 36224213 ~ 36225379 (-) True G2132971

Expression Profile