RNA id: TCONS_00057332


Basic Information

Item Value
RNA id TCONS_00057332
length 1139
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_028600
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12741362 ~ 12744353 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGAAAAGGGAAGGGAGCAAAAGAGATCCGAAGAGGAAAAACAAAGACAAAGGCAACTTTACAGAACTTAGTCCTCCGGAAGCTTAAGAAACTCAAGGACCTGGCAAAAAGACCTTGGGTTTTTCACCTGCTCATCACTTTGAGAGTCTCCCAACATGAAACAAGATGTAGAAGGATACCTCACTTAGTCTACACTCAGGTGGGTCTCCCTTCATCTGAGAGTAAAGAAAGCAGCCAGTGTACTTTAAGGCACTTTGAACATGATATGAAACAGCACAAGTCTTGCAAACGTACCTTCTGGGGTGGGATCGTGTGGAGTTCATTGTCTTCTCGTGTTCATACAAAGAAAACTGTACTCGCTGGACCAGGCAGCCTTCTTCCACTGCTACAAGGTCCAGATCAGACACTCATGTGCTTCTTGTAGGCACTTCCGTCCAGTTCAGACACTCTTGTGCTCCTTGTAGGCACATCCACTGGTGGTCATCATTTGCAGTCTGATTGGTCTACTGTTATGCTGTGTTATGTTATGCTACCATAAGCGGCAGAGTTGCAATACATTCCCCCCCTAACCATCTAAATGTGTTGTACTTTTCTGTTGGCTTGGGCCAGATGGGACAGCCTCTATTGCCTTCAAGCCTCAAAGAGCCTTGGGAGTCCAACATCCTGAGGCCATTTTTTGCcatgtgaaattttttttgaGCAATTCTTATCACTGCTATTCAGGAATAAAGGGCCGTTCACACTAATTTATAACAGTAAAGACATAGCTCTGAGTGTTAAAACAAAGGCAGAGCTCAGACTATAAGGATTAAGAAGTAGAGAAATAATATCCTTGGGATCACTTTGAGAACCATCTTTGTCCAACCAACAAACTATAAAACGCTGATAGAcagtcagaatttttttaaatgtaaaggacGCATGCAAATTAAAGCTACAGATGACATTGTGGAGAAGCACTTTACTTCATGTTAAGCCCTCTTTTGATGACTATGTTAAAAACAATTTGTTAATGTTACCATTGTTTGAATGTAAAGAAGCCATTCAAGCCAGGCCACCAAATTGAAGTAAAGTAATAAAAGTACTTCAGGTATCCAATGATCGTTTTTAGCCTCTTTGTGTTGCCTTTGTTTTCTG

Function

GO:

id name namespace
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0055064 chloride ion homeostasis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0098693 regulation of synaptic vesicle cycle biological_process
GO:2000300 regulation of synaptic vesicle exocytosis biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1903305 regulation of regulated secretory pathway biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:1902803 regulation of synaptic vesicle transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055467 lncRNA downstream 23610 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00055459 lncRNA downstream 418203 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00058124 lncRNA downstream 443912 12288765 ~ 12297450 (-) True XLOC_028593
TCONS_00058123 lncRNA downstream 450819 12288765 ~ 12290543 (-) False XLOC_028593
TCONS_00058122 lncRNA downstream 451041 12288765 ~ 12290321 (-) False XLOC_028593
TCONS_00055482 lncRNA upstream 51135 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00055485 lncRNA upstream 131382 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055484 lncRNA upstream 131382 12873982 ~ 12883327 (-) True XLOC_028605
TCONS_00055494 lncRNA upstream 229322 12971922 ~ 12975475 (-) False XLOC_028608
TCONS_00058126 lncRNA upstream 246378 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00055469 mRNA downstream 15849 12718965 ~ 12725513 (-) False XLOC_028599
TCONS_00055470 mRNA downstream 17777 12718967 ~ 12723585 (-) True XLOC_028599
TCONS_00055466 mRNA downstream 22995 12715695 ~ 12718367 (-) False XLOC_028598
TCONS_00055468 mRNA downstream 23259 12716227 ~ 12718103 (-) True XLOC_028598
TCONS_00055461 mRNA downstream 264084 12401146 ~ 12477278 (-) False XLOC_028596
TCONS_00055471 mRNA upstream 12536 12755136 ~ 12766418 (-) True XLOC_028601
TCONS_00055472 mRNA upstream 27351 12769951 ~ 12781182 (-) False XLOC_028602
TCONS_00055474 mRNA upstream 39534 12782134 ~ 12790971 (-) False XLOC_028603
TCONS_00055475 mRNA upstream 43364 12785964 ~ 12790886 (-) False XLOC_028603
TCONS_00055477 mRNA upstream 43364 12785964 ~ 12794045 (-) False XLOC_028603
TCONS_00055465 other downstream 145558 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 308346 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055457 other downstream 455296 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055433 other downstream 1133079 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 1134507 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055473 other upstream 35109 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 164381 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055495 other upstream 232616 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055502 other upstream 465511 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055510 other upstream 821067 13563667 ~ 13567275 (-) True XLOC_028621

Expression Profile

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