RNA id: trnaw-cca-65


Basic Information

Item Value
RNA id trnaw-cca-65
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-65
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35136981 ~ 35137052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437769 lncRNA downstream 11258 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 23044 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 24532 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 67842 35068518 ~ 35069139 (-) True G2131950
TU2437681 lncRNA downstream 94303 35041966 ~ 35042678 (-) True G2131906
TU2437798 lncRNA upstream 119635 35256687 ~ 35257074 (-) True G2132010
TU2437804 lncRNA upstream 197826 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 219372 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 248872 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 259965 35397017 ~ 35397255 (-) True G2132083
trnaw-cca-64 mRNA downstream 1488 35135422 ~ 35135493 (-) True trnaw-cca-64
trnaw-cca-63 mRNA downstream 3047 35133863 ~ 35133934 (-) True trnaw-cca-63
trnaw-cca-62 mRNA downstream 4355 35132555 ~ 35132626 (-) True trnaw-cca-62
XM_021590044.2 mRNA downstream 31962 35092222 ~ 35105019 (-) True LOC110509086
XM_036966584.1 mRNA downstream 80603 34925386 ~ 35056378 (-) False LOC110509081
trnaw-cca-66 mRNA upstream 1233 35138285 ~ 35138356 (-) True trnaw-cca-66
trnaw-cca-67 mRNA upstream 2537 35139589 ~ 35139660 (-) True trnaw-cca-67
trnaw-cca-68 mRNA upstream 3841 35140893 ~ 35140964 (-) True trnaw-cca-68
trnaw-cca-69 mRNA upstream 6438 35143490 ~ 35143561 (-) True trnaw-cca-69
trnaw-cca-70 mRNA upstream 7742 35144794 ~ 35144865 (-) True trnaw-cca-70
TU2437347 other downstream 618852 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 618852 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 650805 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1078711 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1094416 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 868437 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 879010 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 886728 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 886738 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1087161 36224213 ~ 36225379 (-) True G2132971