RNA id: trnaw-cca-66


Basic Information

Item Value
RNA id trnaw-cca-66
length 72
RNA type mRNA
GC content 0.54
exon number 1
gene id trnaw-cca-66
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35138285 ~ 35138356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccttgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcatgTCGTGGTCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437769 lncRNA downstream 12562 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 24348 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 25836 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 69146 35068518 ~ 35069139 (-) True G2131950
TU2437681 lncRNA downstream 95607 35041966 ~ 35042678 (-) True G2131906
TU2437798 lncRNA upstream 118331 35256687 ~ 35257074 (-) True G2132010
TU2437804 lncRNA upstream 196522 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 218068 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 247568 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 258661 35397017 ~ 35397255 (-) True G2132083
trnaw-cca-65 mRNA downstream 1233 35136981 ~ 35137052 (-) True trnaw-cca-65
trnaw-cca-64 mRNA downstream 2792 35135422 ~ 35135493 (-) True trnaw-cca-64
trnaw-cca-63 mRNA downstream 4351 35133863 ~ 35133934 (-) True trnaw-cca-63
trnaw-cca-62 mRNA downstream 5659 35132555 ~ 35132626 (-) True trnaw-cca-62
XM_021590044.2 mRNA downstream 33266 35092222 ~ 35105019 (-) True LOC110509086
trnaw-cca-67 mRNA upstream 1233 35139589 ~ 35139660 (-) True trnaw-cca-67
trnaw-cca-68 mRNA upstream 2537 35140893 ~ 35140964 (-) True trnaw-cca-68
trnaw-cca-69 mRNA upstream 5134 35143490 ~ 35143561 (-) True trnaw-cca-69
trnaw-cca-70 mRNA upstream 6438 35144794 ~ 35144865 (-) True trnaw-cca-70
trnaw-cca-71 mRNA upstream 9035 35147391 ~ 35147462 (-) True trnaw-cca-71
TU2437347 other downstream 620156 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 620156 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 652109 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1080015 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1095720 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 867133 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 877706 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 885424 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 885434 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1085857 36224213 ~ 36225379 (-) True G2132971

Expression Profile