RNA id: TCONS_00055471


Basic Information

Item Value
RNA id TCONS_00055471
length 1444
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_028601
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12755136 ~ 12766418 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGATTGGCTGAGAGCGTTGACGTATCAGTGACTAGCAAGCAATCCAGGAAGACGGCAAGTAGCGTAAGCTGTCAACGTGAGGAGCTGCAGCTTGTCAAACAACCggatttttacaatttatttcatTCAGTGATTTACATTTCATCATGTCTGCGAGAAATCCAGGAATGCACCTTGATCTGGAATGGGTGTCAAAAGTCAGGGTCAACACTCAGGCTGTTCATAAAAGAGCTCAGCAGATCCAGGGACGCAAAATGGCCAAGAAGCAGTGGCAGGCTGCCTGGCTGCTAAAGGCTGTCACATGCATCGATCTGACGACCCTCGCCGGTGACGATACTCCTTCCAATGTCCATCGACTGTGTATGAAGGCCACACAGCCCATAAGACATGATCTGCTGAAGAGCATGGACATGCATGACAAAGGCATCTCgactgcagctgtgtgtgtgtacccATCACGGGTGGCTGACGCTGTGAAGTCTCTGAAAGCTGCCAACTCCAGTCTTCCTGTTGCGTCGGTGGCCACTGGTTTCCCTGCTGGACAGACGCCACTGAAGACCCGTCTCGAGGAAGTCCAGATGGCTGTGAAGGACGGTGCTGCAGAAATTGATATCGTCATAAACCGGACATTGGCACTCACTGGACAgtgggcagCTCTCTATGAGGAGATCCGGCAGTTCAGAGAGGCCTGTGGAGACGCTCATATGAAAAGCATCCTGGCGGTAGGAGAACTGGGAACTTTCACAAACGTCTATAAGGCCAGTCTGGTGTCCATGATGGCAGGATCTGACTTCATCAAGACTTCAACCGGCAAAGAGTCAGTCAATGCAACCTACCCGGTAGCCATTGTAATGGTGCGTGCCATTCGTGACTACTACCTGAAGACCGGCCACAAAGTGGGTTTCAAGCCAGCGGGAGGCATCCGAACAGCGCAGGAGTCTGTGGTTTGGCTGACGCTGATGAAGGAAGAACTCGGAGACGACTGGCTCAATCCACACCTTTTCCGACTCGGAGCAAGCAGCCTGTTAGCTGACATCGAGCGGCAGATTTACCACTACGTGACCGGAAGATATCCTGCCTATCATGAACTTCCCATGGCCTAAATCTGAGGGAaagaaaaatgcaaaaacatGGAGGTTCGGGAGAAAGAAAGGTGTTCAGATCAGCCAAGAATGCAATAACTAAGCCATCACGTGTGTTTATAAGGTCAATTATGAAAAAAGTTACTGTGTTAAGGACTTCATTTGTTAGTGTTAGTAAATGATTaggctaacatgaattagcaatGAGTAATATTTACACTATGAAATCTTGTTTCATCACAGAATATCTTGCAGTTTTAAACGCACAATTGTTTGTTTCACAAAATGATGAGAAAAAGTTTGCATGATTTAAATACAGAATTGCAAGAAGATATAAATCCTGGAAATGTGATTAGCAA

Function

GO:

id name namespace
GO:0009264 deoxyribonucleotide catabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004139 deoxyribose-phosphate aldolase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway

ZFIN:

id description
ZDB-GENE-041010-200 Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including intermediate cell mass of mesoderm; liver; pronephric duct; retinal pigmented epithelium; and ventral mesoderm. Orthologous to human DERA (deoxyribose-phosphate aldolase).

Ensembl:

ensembl_id ENSDART00000024312

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058125 lncRNA downstream 10783 12741401 ~ 12744353 (-) True XLOC_028600
TCONS_00057332 lncRNA downstream 12536 12741362 ~ 12742600 (-) False XLOC_028600
TCONS_00055467 lncRNA downstream 37384 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00055459 lncRNA downstream 431977 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00058124 lncRNA downstream 457686 12288765 ~ 12297450 (-) True XLOC_028593
TCONS_00055482 lncRNA upstream 27317 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00055485 lncRNA upstream 107564 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055484 lncRNA upstream 107564 12873982 ~ 12883327 (-) True XLOC_028605
TCONS_00055494 lncRNA upstream 205504 12971922 ~ 12975475 (-) False XLOC_028608
TCONS_00058126 lncRNA upstream 222560 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00055469 mRNA downstream 29623 12718965 ~ 12725513 (-) False XLOC_028599
TCONS_00055470 mRNA downstream 31551 12718967 ~ 12723585 (-) True XLOC_028599
TCONS_00055466 mRNA downstream 36769 12715695 ~ 12718367 (-) False XLOC_028598
TCONS_00055468 mRNA downstream 37033 12716227 ~ 12718103 (-) True XLOC_028598
TCONS_00055461 mRNA downstream 277858 12401146 ~ 12477278 (-) False XLOC_028596
TCONS_00055472 mRNA upstream 3533 12769951 ~ 12781182 (-) False XLOC_028602
TCONS_00055474 mRNA upstream 15716 12782134 ~ 12790971 (-) False XLOC_028603
TCONS_00055475 mRNA upstream 19546 12785964 ~ 12790886 (-) False XLOC_028603
TCONS_00055477 mRNA upstream 19546 12785964 ~ 12794045 (-) False XLOC_028603
TCONS_00055476 mRNA upstream 19546 12785964 ~ 12794045 (-) False XLOC_028603
TCONS_00055465 other downstream 159332 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 322120 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055457 other downstream 469070 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055433 other downstream 1146853 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 1148281 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055473 other upstream 11291 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 140563 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055495 other upstream 208798 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055502 other upstream 441693 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055510 other upstream 797249 13563667 ~ 13567275 (-) True XLOC_028621

Expression Profile

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