RNA id: trnaw-cca-80


Basic Information

Item Value
RNA id trnaw-cca-80
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-80
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35164299 ~ 35164370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437769 lncRNA downstream 38576 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 50362 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 51850 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 95160 35068518 ~ 35069139 (-) True G2131950
TU2437681 lncRNA downstream 121621 35041966 ~ 35042678 (-) True G2131906
TU2437798 lncRNA upstream 92317 35256687 ~ 35257074 (-) True G2132010
TU2437804 lncRNA upstream 170508 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 192054 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 221554 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 232647 35397017 ~ 35397255 (-) True G2132083
trnaw-cca-79 mRNA downstream 1233 35162995 ~ 35163066 (-) True trnaw-cca-79
trnaw-cca-78 mRNA downstream 3830 35160398 ~ 35160469 (-) True trnaw-cca-78
trnaw-cca-77 mRNA downstream 5134 35159094 ~ 35159165 (-) True trnaw-cca-77
trnaw-cca-76 mRNA downstream 7731 35156497 ~ 35156568 (-) True trnaw-cca-76
trnaw-cca-75 mRNA downstream 9035 35155193 ~ 35155264 (-) True trnaw-cca-75
trnaw-cca-81 mRNA upstream 1233 35165603 ~ 35165674 (-) True trnaw-cca-81
trnaw-cca-82 mRNA upstream 2537 35166907 ~ 35166978 (-) True trnaw-cca-82
trnaw-cca-83 mRNA upstream 3841 35168211 ~ 35168282 (-) True trnaw-cca-83
trnaw-cca-84 mRNA upstream 6438 35170808 ~ 35170879 (-) True trnaw-cca-84
trnaw-cca-85 mRNA upstream 7742 35172112 ~ 35172183 (-) True trnaw-cca-85
TU2437347 other downstream 646170 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 646170 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 678123 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1106029 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1121734 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 841119 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 851692 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 859410 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 859420 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1059843 36224213 ~ 36225379 (-) True G2132971