RNA id: trnaw-cca-84


Basic Information

Item Value
RNA id trnaw-cca-84
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-84
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35170808 ~ 35170879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437769 lncRNA downstream 45085 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 56871 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 58359 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 101669 35068518 ~ 35069139 (-) True G2131950
TU2437681 lncRNA downstream 128130 35041966 ~ 35042678 (-) True G2131906
TU2437798 lncRNA upstream 85808 35256687 ~ 35257074 (-) True G2132010
TU2437804 lncRNA upstream 163999 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 185545 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 215045 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 226138 35397017 ~ 35397255 (-) True G2132083
trnaw-cca-83 mRNA downstream 2526 35168211 ~ 35168282 (-) True trnaw-cca-83
trnaw-cca-82 mRNA downstream 3830 35166907 ~ 35166978 (-) True trnaw-cca-82
trnaw-cca-81 mRNA downstream 5134 35165603 ~ 35165674 (-) True trnaw-cca-81
trnaw-cca-80 mRNA downstream 6438 35164299 ~ 35164370 (-) True trnaw-cca-80
trnaw-cca-79 mRNA downstream 7742 35162995 ~ 35163066 (-) True trnaw-cca-79
trnaw-cca-85 mRNA upstream 1233 35172112 ~ 35172183 (-) True trnaw-cca-85
trnaw-cca-86 mRNA upstream 3830 35174709 ~ 35174780 (-) True trnaw-cca-86
trnaw-cca-87 mRNA upstream 5134 35176013 ~ 35176084 (-) True trnaw-cca-87
trnaw-cca-88 mRNA upstream 7731 35178610 ~ 35178681 (-) True trnaw-cca-88
trnaw-cca-89 mRNA upstream 16204 35187083 ~ 35187155 (-) True trnaw-cca-89
TU2437347 other downstream 652679 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 652679 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 684632 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1112538 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1128243 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 834610 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 845183 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 852901 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 852911 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1053334 36224213 ~ 36225379 (-) True G2132971