RNA id: trnaw-cca-105


Basic Information

Item Value
RNA id trnaw-cca-105
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-105
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35217800 ~ 35217871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437769 lncRNA downstream 92077 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 103863 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 105351 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 148661 35068518 ~ 35069139 (-) True G2131950
TU2437681 lncRNA downstream 175122 35041966 ~ 35042678 (-) True G2131906
TU2437798 lncRNA upstream 38816 35256687 ~ 35257074 (-) True G2132010
TU2437804 lncRNA upstream 117007 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 138553 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 168053 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 179146 35397017 ~ 35397255 (-) True G2132083
trnaw-cca-104 mRNA downstream 1490 35216239 ~ 35216310 (-) True trnaw-cca-104
trnaw-cca-103 mRNA downstream 3050 35214679 ~ 35214750 (-) True trnaw-cca-103
trnaw-cca-102 mRNA downstream 4357 35213372 ~ 35213443 (-) True trnaw-cca-102
trnaw-cca-101 mRNA downstream 5918 35211811 ~ 35211882 (-) True trnaw-cca-101
trnaw-cca-100 mRNA downstream 7225 35210504 ~ 35210575 (-) True trnaw-cca-100
trnaw-cca-106 mRNA upstream 1490 35219361 ~ 35219432 (-) True trnaw-cca-106
trnaw-cca-107 mRNA upstream 3051 35220922 ~ 35220993 (-) True trnaw-cca-107
trnaw-cca-108 mRNA upstream 4612 35222483 ~ 35222554 (-) True trnaw-cca-108
trnaw-cca-109 mRNA upstream 6173 35224044 ~ 35224115 (-) True trnaw-cca-109
trnaw-cca-110 mRNA upstream 7734 35225605 ~ 35225676 (-) True trnaw-cca-110
TU2437347 other downstream 699671 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 699671 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 731624 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1159530 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1175235 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 787618 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 798191 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 805909 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 805919 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1006342 36224213 ~ 36225379 (-) True G2132971