RNA id: trnaw-cca-112


Basic Information

Item Value
RNA id trnaw-cca-112
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-112
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35228727 ~ 35228798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437769 lncRNA downstream 103004 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 114790 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 116278 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 159588 35068518 ~ 35069139 (-) True G2131950
TU2437681 lncRNA downstream 186049 35041966 ~ 35042678 (-) True G2131906
TU2437798 lncRNA upstream 27889 35256687 ~ 35257074 (-) True G2132010
TU2437804 lncRNA upstream 106080 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 127626 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 157126 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 168219 35397017 ~ 35397255 (-) True G2132083
trnaw-cca-111 mRNA downstream 1490 35227166 ~ 35227237 (-) True trnaw-cca-111
trnaw-cca-110 mRNA downstream 3051 35225605 ~ 35225676 (-) True trnaw-cca-110
trnaw-cca-109 mRNA downstream 4612 35224044 ~ 35224115 (-) True trnaw-cca-109
trnaw-cca-108 mRNA downstream 6173 35222483 ~ 35222554 (-) True trnaw-cca-108
trnaw-cca-107 mRNA downstream 7734 35220922 ~ 35220993 (-) True trnaw-cca-107
trnaw-cca-113 mRNA upstream 1490 35230288 ~ 35230359 (-) True trnaw-cca-113
trnaw-cca-114 mRNA upstream 3049 35231847 ~ 35231918 (-) True trnaw-cca-114
trnaw-cca-115 mRNA upstream 4351 35233149 ~ 35233220 (-) True trnaw-cca-115
trnaw-cca-116 mRNA upstream 5905 35234703 ~ 35234774 (-) True trnaw-cca-116
trnaw-cca-117 mRNA upstream 7464 35236262 ~ 35236333 (-) True trnaw-cca-117
TU2437347 other downstream 710598 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 710598 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 742551 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1170457 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1186162 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 776691 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 787264 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 794982 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 794992 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 995415 36224213 ~ 36225379 (-) True G2132971