RNA id: trnaw-cca-115


Basic Information

Item Value
RNA id trnaw-cca-115
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnaw-cca-115
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35233149 ~ 35233220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgtgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437769 lncRNA downstream 107426 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 119212 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 120700 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 164010 35068518 ~ 35069139 (-) True G2131950
TU2437681 lncRNA downstream 190471 35041966 ~ 35042678 (-) True G2131906
TU2437798 lncRNA upstream 23467 35256687 ~ 35257074 (-) True G2132010
TU2437804 lncRNA upstream 101658 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 123204 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 152704 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 163797 35397017 ~ 35397255 (-) True G2132083
trnaw-cca-114 mRNA downstream 1231 35231847 ~ 35231918 (-) True trnaw-cca-114
trnaw-cca-113 mRNA downstream 2790 35230288 ~ 35230359 (-) True trnaw-cca-113
trnaw-cca-112 mRNA downstream 4351 35228727 ~ 35228798 (-) True trnaw-cca-112
trnaw-cca-111 mRNA downstream 5912 35227166 ~ 35227237 (-) True trnaw-cca-111
trnaw-cca-110 mRNA downstream 7473 35225605 ~ 35225676 (-) True trnaw-cca-110
trnaw-cca-116 mRNA upstream 1483 35234703 ~ 35234774 (-) True trnaw-cca-116
trnaw-cca-117 mRNA upstream 3042 35236262 ~ 35236333 (-) True trnaw-cca-117
trnaw-cca-118 mRNA upstream 4344 35237564 ~ 35237635 (-) True trnaw-cca-118
trnaw-cca-119 mRNA upstream 5896 35239116 ~ 35239187 (-) True trnaw-cca-119
trnaw-cca-120 mRNA upstream 7198 35240418 ~ 35240489 (-) True trnaw-cca-120
TU2437347 other downstream 715020 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 715020 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 746973 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1174879 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1190584 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 772269 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 782842 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 790560 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 790570 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 990993 36224213 ~ 36225379 (-) True G2132971