RNA id: TCONS_00055484


Basic Information

Item Value
RNA id TCONS_00055484
length 930
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_028605
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12873982 ~ 12883327 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCACAAATACACAGTAAAaaccaaaatacaaaaaaaaagcagtGAAAAGCACAGATtgtttaatgctttttattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttgcagGTAGTGACAACATTGACCTTTGCAGGCCCTCATTCACTTTTTTCTATCATCCCACATTCCCAACATTCCTGATGGAGCAGGCCTCACCAATCACCTCCTCAATCCAGACAGAGGCCACAAGACTGACCTTTGCTCCGCAATGGAAAACCACACTCCAGGTGAAGGACAATCTTCATGGAGCAGTAATATTGAGGTAAGAATTTTACTATAGAATATCCAATATATATAATTGATTTGAGTTGATAAGCTCTGGACTCTTCAGAACGCGATCAGAAGGTTTATTTGTGGATCACTTTGGTTAACGTTCACAGGGCTTGGCTGTGATTAGTTATCAGTGCGGAAGATGAACTGATGGATTGATGTGGGACAGATCACCTTCACCTGCTGAAGTTCTACAGGTCAGTCTATTGTGTGGTGTGTTTGCAGACAAATACAGCTTCTCATGTTAGTGGAGGTGGTCCAGGTCAGGCCCTCGGGGTCCCGGGAACAGCGGGACTGCGTTACGGCTCATCCCACCTGTTGCCTGAATTGGTAATATATCAAGTCATTTGTTAAAAAGGATAGGTCACCCACAACTAAGCACTCTCACTATGTTAACTCATTTAACTTCTATTTGAGTAATACTGTCAAGCTCCAGACTCTATTCAATCTTTAATTTTTAAGagtgtatttgtaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacatacatatatatatatatatatatatatatatatacatacatatatatatatatatatatat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194389

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055482 lncRNA downstream 79800 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00058125 lncRNA downstream 129629 12741401 ~ 12744353 (-) True XLOC_028600
TCONS_00057332 lncRNA downstream 131382 12741362 ~ 12742600 (-) False XLOC_028600
TCONS_00055467 lncRNA downstream 156230 12715922 ~ 12717752 (-) False XLOC_028598
TCONS_00055459 lncRNA downstream 550823 12321818 ~ 12323159 (-) True XLOC_028594
TCONS_00055494 lncRNA upstream 88595 12971922 ~ 12975475 (-) False XLOC_028608
TCONS_00058126 lncRNA upstream 105651 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00057333 lncRNA upstream 140180 13023507 ~ 13024168 (-) True XLOC_028611
TCONS_00055501 lncRNA upstream 254678 13138005 ~ 13156743 (-) False XLOC_028612
TCONS_00057335 lncRNA upstream 462345 13345672 ~ 13393170 (-) False XLOC_028613
TCONS_00055483 mRNA downstream 11895 12819272 ~ 12862087 (-) True XLOC_028604
TCONS_00055479 mRNA downstream 78493 12793396 ~ 12795489 (-) False XLOC_028603
TCONS_00055481 mRNA downstream 78546 12793718 ~ 12795436 (-) False XLOC_028603
TCONS_00055480 mRNA downstream 78952 12793676 ~ 12795030 (-) False XLOC_028603
TCONS_00055478 mRNA downstream 82992 12786166 ~ 12790990 (-) False XLOC_028603
TCONS_00055486 mRNA upstream 7341 12890668 ~ 12907826 (-) False XLOC_028606
TCONS_00055487 mRNA upstream 7341 12890668 ~ 12914307 (-) False XLOC_028606
TCONS_00055489 mRNA upstream 9280 12892607 ~ 12914163 (-) False XLOC_028606
TCONS_00055488 mRNA upstream 9280 12892607 ~ 12914163 (-) False XLOC_028606
TCONS_00055490 mRNA upstream 9280 12892607 ~ 12914192 (-) False XLOC_028606
TCONS_00055473 other downstream 92847 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055465 other downstream 278178 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 440966 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055457 other downstream 587916 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055433 other downstream 1265699 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055491 other upstream 23654 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055495 other upstream 91889 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055502 other upstream 324784 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055510 other upstream 680340 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055533 other upstream 1283715 14167042 ~ 14169631 (-) False XLOC_028633