RNA id: trnaw-cca-138


Basic Information

Item Value
RNA id trnaw-cca-138
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-138
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35266535 ~ 35266606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437798 lncRNA downstream 9461 35256687 ~ 35257074 (-) True G2132010
TU2437769 lncRNA downstream 140812 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 152598 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 154086 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 197396 35068518 ~ 35069139 (-) True G2131950
TU2437804 lncRNA upstream 68272 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 89818 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 119318 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 130411 35397017 ~ 35397255 (-) True G2132083
TU2437891 lncRNA upstream 141322 35407928 ~ 35408146 (-) True G2132089
trnaw-cca-137 mRNA downstream 1487 35264977 ~ 35265048 (-) True trnaw-cca-137
trnaw-cca-136 mRNA downstream 3039 35263425 ~ 35263496 (-) True trnaw-cca-136
trnaw-cca-135 mRNA downstream 4584 35261880 ~ 35261951 (-) True trnaw-cca-135
trnaw-cca-134 mRNA downstream 5881 35260583 ~ 35260654 (-) True trnaw-cca-134
trnaw-cca-133 mRNA downstream 7176 35259288 ~ 35259359 (-) True trnaw-cca-133
trnaw-cca-139 mRNA upstream 1233 35267839 ~ 35267910 (-) True trnaw-cca-139
trnaw-cca-140 mRNA upstream 2784 35269390 ~ 35269461 (-) True trnaw-cca-140
trnaw-cca-141 mRNA upstream 4088 35270694 ~ 35270765 (-) True trnaw-cca-141
trnaw-cca-142 mRNA upstream 5642 35272248 ~ 35272319 (-) True trnaw-cca-142
trnaw-cca-143 mRNA upstream 7199 35273805 ~ 35273876 (-) True trnaw-cca-143
TU2437347 other downstream 748406 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 748406 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 780359 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1208265 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1223970 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 738883 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 749456 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 757174 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 757184 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 957607 36224213 ~ 36225379 (-) True G2132971