RNA id: TCONS_00055489


Basic Information

Item Value
RNA id TCONS_00055489
length 2117
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_028606
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12890668 ~ 12914307 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGGTGAAGCTCTGTTTGACAAATGCGCTGCTCTCCCCGCGGCCCCCCTTTCCTGTATACTCTGCTGTCCTGCTCGGTTATAACGCTATTTCTGCTGTCCGtcTGAGTGGTTGGAGGGTGTTTTATTAGGTGGCTCTCTTCTCGCCGCTGTTTCTGTTCACCCAGGAGCACCGGTGGCCATGTCCGGCTTCAATCTTCTGCATCTGGTCAGCCAAGGCCAACCTGTAAAACTCAAGGCCTGCGGGCTCCCCTCAGGAACGTGCCGAAGTAAGAAGACATGGCCCAAAACGTTCCCCGAGGAGGAGCTGAGGAAGCGTTTGACCCCAATGCAGTACCATGTTACTCAGCAGAAGGGCACAGAGAGCGCATTCACAGGAAAATATGTCGATAATAAAGAGGAGGGAACTTACCACTGTGTTGTTTGCGGTGCACCTCTTTTCATGTCTGAAAAGAAGTTTGACTCAGGATCAGGATGGCCTTCTTTTTTCGATTTGATCAATAAGGACGCTATAGCTCAAACAGATGACTTTTCATACGGAATGCACAGAGTGGAGACAACCTGCAGTCAGTGTGGTGCTCACCTGGGCCACCTCTTCGATGATGGACCTCGACCAACAAAGAAACGCTACTGCATAAACTCGGCCTCACTCAGTTTCCAGCCCAAAAACAGTGCCACTGAGGAAGTGGAGGCATCTGGAGCAGCCGGTCAATCATCCACTAGCAAGAATGAAGAACTTTAATCGGACTTGGAAGAAGATCAGATCAACTCCAAAGTCACTCCAACTGTCGATTCCAAATCAAGTGAGCTGTGCAATCATGCTTAGCAACATTGGTCGGAATGATGGGTCCTTCAAAGATCAGAATACGCAATAATATCAGTGTTCAGATATCAGATTATAATGGCCTTATGTTTTCTCCTTAACTTCTGCACTTTAATTATTGCGCCATTTGAAGAACTCGCTTCACTTCCATAAAATTTACTCAGCTAAACTGTTATTGAACACTCAGTGGTGGTTTTAAAATCTAGataactataatatttttctGCTACAATGTGTGAGACCAAATCTGGGGTTTTAAgtgaactttttaaaatgtcttctcatttaaaacaaaagctTCCAGAATATTTGCGTACAAAGAAacatccctgcaggcacaggacaccaacatgatgtcatattgacgttgtaccacAACAAACCCCAAAGTCGTGGGGACTTTTTTTGGATattaaaatcgggttgacgtcagaacccaacatcaggccgtcGTCAGTgttcaacgtccaacctaaaatcaaccaaatgtctaCATCTAATCATGTTTCACCTTAACGTTGTGTGGACaataccactatgacatctatcagtcACTTTCCatcttaaaatcaaccaaatatgaaTGTAATTTGACGTCGTAATTGGACATCAAAACCAACATTgcccttagacgctggctagacattgagttTTGGTCAACTGACATCATGACCTGTATCTAATCttacgtcttatgatgttgtgtgcctgctgggattgtGGTGGAATACTAATTAGAACTATTTGACTCTGTACAGACGGTTAGACGCTCTTCCATTTAAAGATCAAGACTCTTTGGGTTATTTTCAAATCCTGCTAGAGAACATGATAAACATCAGGTTGATGTTGAATTTTTCATTGAAATTTTAACTCGCATTGTTACTCTAATAATATTCTTCATGCATTTTTTCACTAGTGGTCTCTGACTTTCTGGACCCCATTGTATATTGAAAGCCTAGTCATTGGAAACAAATTCTAGATGTGTGCTTTCTCAGAGCGCTGTGTTGTTTTTGAAGTGACATGTGATACAGGGAGGTCAAGAAGTTTGGAGAAAATGCTATGCGAGTGCTCCTGTGAGCAGTAAAATAAGCACCGGTCGGAGAACAAAGCATTCTTTGAAATAAAATGGAACAGATGACAAATGTTTAGTCTGAACACAAATGTAGCCTGACTTTTAAGGGTGCTTTTTTTGGTCTCCCTGCTTGCAGTGCCTATTTTCGTCTTGAGTtgatatcgttttttttttttcttgagataAAGTTTCACATAGattgataaaaataaattcttattGA

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0048839 inner ear development biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-74 Predicted to enable peptide-methionine (R)-S-oxide reductase activity. Acts upstream of or within inner ear development. Predicted to be active in cytoplasm. Is expressed in heart rudiment; heart tube; inner ear; and myotome. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 74. Orthologous to human MSRB3 (methionine sulfoxide reductase B3).

Ensembl:

ensembl_id ENSDART00000145917

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055485 lncRNA downstream 9280 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055484 lncRNA downstream 9280 12873982 ~ 12883327 (-) True XLOC_028605
TCONS_00055482 lncRNA downstream 98425 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00058125 lncRNA downstream 148254 12741401 ~ 12744353 (-) True XLOC_028600
TCONS_00057332 lncRNA downstream 150007 12741362 ~ 12742600 (-) False XLOC_028600
TCONS_00055494 lncRNA upstream 57759 12971922 ~ 12975475 (-) False XLOC_028608
TCONS_00058126 lncRNA upstream 74815 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00057333 lncRNA upstream 109344 13023507 ~ 13024168 (-) True XLOC_028611
TCONS_00055501 lncRNA upstream 223842 13138005 ~ 13156743 (-) False XLOC_028612
TCONS_00057335 lncRNA upstream 431509 13345672 ~ 13393170 (-) False XLOC_028613
TCONS_00055483 mRNA downstream 30520 12819272 ~ 12862087 (-) True XLOC_028604
TCONS_00055479 mRNA downstream 97118 12793396 ~ 12795489 (-) False XLOC_028603
TCONS_00055481 mRNA downstream 97171 12793718 ~ 12795436 (-) False XLOC_028603
TCONS_00055480 mRNA downstream 97577 12793676 ~ 12795030 (-) False XLOC_028603
TCONS_00055478 mRNA downstream 101617 12786166 ~ 12790990 (-) False XLOC_028603
TCONS_00055492 mRNA upstream 3001 12917164 ~ 12930086 (-) True XLOC_028607
TCONS_00055493 mRNA upstream 57092 12971255 ~ 12978925 (-) False XLOC_028608
TCONS_00055496 mRNA upstream 79750 12993913 ~ 12997348 (-) False XLOC_028610
TCONS_00055497 mRNA upstream 79750 12993913 ~ 12997587 (-) True XLOC_028610
TCONS_00055498 mRNA upstream 121707 13035870 ~ 13255813 (-) False XLOC_028612
TCONS_00055473 other downstream 111472 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055465 other downstream 296803 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 459591 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055457 other downstream 606541 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055433 other downstream 1284324 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055495 other upstream 61053 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055502 other upstream 293948 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055510 other upstream 649504 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055533 other upstream 1252879 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 1262358 14176521 ~ 14179480 (-) True XLOC_028636

Expression Profile

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