RNA id: trnaw-cca-153


Basic Information

Item Value
RNA id trnaw-cca-153
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-153
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35288603 ~ 35288674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437798 lncRNA downstream 31529 35256687 ~ 35257074 (-) True G2132010
TU2437769 lncRNA downstream 162880 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 174666 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 176154 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 219464 35068518 ~ 35069139 (-) True G2131950
TU2437804 lncRNA upstream 46204 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 67750 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 97250 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 108343 35397017 ~ 35397255 (-) True G2132083
TU2437891 lncRNA upstream 119254 35407928 ~ 35408146 (-) True G2132089
trnaw-cca-152 mRNA downstream 1491 35287041 ~ 35287112 (-) True trnaw-cca-152
trnaw-cca-151 mRNA downstream 3046 35285486 ~ 35285557 (-) True trnaw-cca-151
trnaw-cca-150 mRNA downstream 4350 35284182 ~ 35284253 (-) True trnaw-cca-150
trnaw-cca-149 mRNA downstream 5908 35282624 ~ 35282695 (-) True trnaw-cca-149
trnaw-cca-148 mRNA downstream 7457 35281075 ~ 35281146 (-) True trnaw-cca-148
trnaw-cca-154 mRNA upstream 2531 35291205 ~ 35291276 (-) True trnaw-cca-154
trnaw-cca-155 mRNA upstream 5134 35293808 ~ 35293879 (-) True trnaw-cca-155
trnaw-cca-156 mRNA upstream 6693 35295367 ~ 35295438 (-) True trnaw-cca-156
trnaw-cca-157 mRNA upstream 9295 35297969 ~ 35298040 (-) True trnaw-cca-157
trnaw-cca-158 mRNA upstream 10854 35299528 ~ 35299599 (-) True trnaw-cca-158
TU2437347 other downstream 770474 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 770474 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 802427 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1230333 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1246038 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 716815 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 727388 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 735106 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 735116 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 935539 36224213 ~ 36225379 (-) True G2132971