RNA id: trnaw-cca-157


Basic Information

Item Value
RNA id trnaw-cca-157
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-157
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35297969 ~ 35298040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437798 lncRNA downstream 40895 35256687 ~ 35257074 (-) True G2132010
TU2437769 lncRNA downstream 172246 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 184032 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 185520 35111996 ~ 35112449 (-) True G2131974
TU2437729 lncRNA downstream 228830 35068518 ~ 35069139 (-) True G2131950
TU2437804 lncRNA upstream 36838 35334878 ~ 35335159 (-) True G2132016
TU2437806 lncRNA upstream 58384 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 87884 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 98977 35397017 ~ 35397255 (-) True G2132083
TU2437891 lncRNA upstream 109888 35407928 ~ 35408146 (-) True G2132089
trnaw-cca-156 mRNA downstream 2531 35295367 ~ 35295438 (-) True trnaw-cca-156
trnaw-cca-155 mRNA downstream 4090 35293808 ~ 35293879 (-) True trnaw-cca-155
trnaw-cca-154 mRNA downstream 6693 35291205 ~ 35291276 (-) True trnaw-cca-154
trnaw-cca-153 mRNA downstream 9295 35288603 ~ 35288674 (-) True trnaw-cca-153
trnaw-cca-152 mRNA downstream 10857 35287041 ~ 35287112 (-) True trnaw-cca-152
trnaw-cca-158 mRNA upstream 1488 35299528 ~ 35299599 (-) True trnaw-cca-158
trnaw-cca-159 mRNA upstream 3047 35301087 ~ 35301158 (-) True trnaw-cca-159
trnaw-cca-160 mRNA upstream 4606 35302646 ~ 35302717 (-) True trnaw-cca-160
trnaw-cca-161 mRNA upstream 6168 35304208 ~ 35304279 (-) True trnaw-cca-161
trnaw-cca-162 mRNA upstream 7727 35305767 ~ 35305838 (-) True trnaw-cca-162
TU2437347 other downstream 779840 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 779840 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 811793 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1239699 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1255404 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 707449 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 718022 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 725740 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 725750 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 926173 36224213 ~ 36225379 (-) True G2132971