RNA id: TCONS_00005241


Basic Information

Item Value
RNA id TCONS_00005241
length 589
lncRNA type retained_intron
GC content 0.41
exon number 2
gene id XLOC_002826
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28311031 ~ 28368913 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCCATCCAGTTTTATCTGGAATTCAGGCCCTTGTTACTGAACGACCTGCTCATAGTTCTTTCTCCAAGACTCGATCACTCGCGAGCCGTCAACTTCTTCAGCAagGTTAAGCAGCTTCCTCTGGTCAAGCCTTACCTGCGGTCAGTACAAAACCACAACAACAAGTCAGTCAATGAAGCACTTAACAACCTCTTCATCTCAGAGGAGGACTATCAGGTACAAACTACACCATAAAGCAGTTTTCTGACACAGTACAGTTTCAGTTTTCATACAAGACCATTAGTGTATTTAGGCTGTTGTCGTTGTAAGACTTCATACACAGTAGTGACATCTATGGGTTGAGTTGATCAGATAATCAGAAAGTACATTCTGATGGATTGTAGGTGGATAAGATGGAACAGACATTTTGCAAATGGTAACTACATTATGGACTAACTAAACTTTGACATTACCTCAGATATGatgtgttttaaatgcatttttcattAGGCAGAAATGGAGGCGAAACCGATTTGAGAGAAAATGATACAGGGAAAAAGGCAATAAAAAGTAGGCCTACAGCGTGGGAGTGTTTTAGCGTGGTCAAC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005819 spindle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0071439 clathrin complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0045334 clathrin-coated endocytic vesicle cellular_component
GO:0032051 clathrin light chain binding molecular_function
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2299 Predicted to enable clathrin light chain binding activity. Predicted to be involved in clathrin coat assembly; mitotic cell cycle; and receptor-mediated endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin complex. Predicted to be active in clathrin-coated endocytic vesicle and spindle. Is expressed in axial vasculature; blood; intermediate cell mass of mesoderm; notochord; and ventral mesoderm. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 56. Orthologous to human CLTC (clathrin heavy chain).

Ensembl:

ensembl_id ENSDART00000136864

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005769 lncRNA downstream 25428 28276683 ~ 28291989 (-) True XLOC_002823
TCONS_00006069 lncRNA downstream 25735 28197916 ~ 28291682 (-) False XLOC_002823
TCONS_00006068 lncRNA downstream 25738 28197916 ~ 28291679 (-) False XLOC_002823
TCONS_00006067 lncRNA downstream 26117 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00006066 lncRNA downstream 26117 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00005242 lncRNA upstream 2158 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00006072 lncRNA upstream 63999 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA upstream 63999 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006073 lncRNA upstream 63999 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00005770 lncRNA upstream 99565 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00005236 mRNA downstream 123775 28172344 ~ 28193642 (-) True XLOC_002822
TCONS_00005234 mRNA downstream 199382 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005233 mRNA downstream 199382 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005235 mRNA downstream 199677 28030042 ~ 28117740 (-) True XLOC_002821
TCONS_00005232 mRNA downstream 289927 28026827 ~ 28027490 (-) True XLOC_002820
TCONS_00005243 mRNA upstream 52730 28370816 ~ 28380928 (-) False XLOC_002827
TCONS_00005247 mRNA upstream 52732 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005246 mRNA upstream 52732 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005245 mRNA upstream 52732 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005244 mRNA upstream 52732 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005238 other downstream 24458 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005237 other downstream 118376 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005228 other downstream 903055 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1147345 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 1308293 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005248 other upstream 53123 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005250 other upstream 124654 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 129820 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 136414 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005262 other upstream 604049 28922135 ~ 28922251 (-) True XLOC_002837

Expression Profile

//