RNA id: TCONS_00055494


Basic Information

Item Value
RNA id TCONS_00055494
length 793
lncRNA type retained_intron
GC content 0.40
exon number 4
gene id XLOC_028608
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12971255 ~ 12978925 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atacaatttttaagAATAATAATGTTGCAATAAatcttgaataaataaaaaatgatgtaaTGGTTGTGCATTTTACACAGACTCTGCTGGAGTCACTGTCTGTTGCTACTGCAGTGTCATTTTATGAGTACACCATAGTCCTCCAGGCTTTTGTGCTGACGTCTGCTGTGTTTCTGGGCCTCACTGCATACACCTTCCAGTCTAAAAGAGACTTCAGCAAACTCGGAGCCAGtttgtttgctgGCCTGTGGATCTTGATCATTGCCAGCTTTCTGAGGTTCTTCTTCTACAATGACACCATGGAGCTGGTGTTCGCTGGGGCCGGAGCTCTGCTGTTCTGCGGCTTCATTATTTTCGATACCCATTTGCTGATGCACAAGCTGTCCCCAGAGGAGCACGTCCTGGCATCCATCAACCTCTACCTGGATATCGTCAACCTGTTCCTGTACATCCTGCGCATCCTCGACGCCATGAAGAAACACTGAATGCTGTGACACTCGTCATCAATGTCACAGGTGAACGTCGGTGCACTCGGTaaattaataatactttaatttattttaaacatactTTCCATACAATAGGACGGAGGGGTTTGGCGGCTGctgaattaatcaaataaaaaaaatgagttattaatcaCTTGACAGATTAAGTGTTGCATTTTTGGACcagaaaatatgaaataattataataaaagcatgaataaagTCATTAAACAGACATGCACTCGATACAGAACgttaatttagcatttttcataTTATTAGTGTATGTATGCTCTTCTACTAT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2152 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM4 (transmembrane BAX inhibitor motif containing 4).

Ensembl:

ensembl_id ENSDART00000123903

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055485 lncRNA downstream 88595 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055484 lncRNA downstream 88595 12873982 ~ 12883327 (-) True XLOC_028605
TCONS_00055482 lncRNA downstream 177740 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00058125 lncRNA downstream 227569 12741401 ~ 12744353 (-) True XLOC_028600
TCONS_00057332 lncRNA downstream 229322 12741362 ~ 12742600 (-) False XLOC_028600
TCONS_00058126 lncRNA upstream 13503 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00057333 lncRNA upstream 48032 13023507 ~ 13024168 (-) True XLOC_028611
TCONS_00055501 lncRNA upstream 162530 13138005 ~ 13156743 (-) False XLOC_028612
TCONS_00057335 lncRNA upstream 370197 13345672 ~ 13393170 (-) False XLOC_028613
TCONS_00057334 lncRNA upstream 370197 13345672 ~ 13393170 (-) True XLOC_028613
TCONS_00055492 mRNA downstream 41836 12917164 ~ 12930086 (-) True XLOC_028607
TCONS_00055487 mRNA downstream 57615 12890668 ~ 12914307 (-) False XLOC_028606
TCONS_00055490 mRNA downstream 57730 12892607 ~ 12914192 (-) False XLOC_028606
TCONS_00055489 mRNA downstream 57759 12892607 ~ 12914163 (-) False XLOC_028606
TCONS_00055488 mRNA downstream 57759 12892607 ~ 12914163 (-) False XLOC_028606
TCONS_00055496 mRNA upstream 18438 12993913 ~ 12997348 (-) False XLOC_028610
TCONS_00055497 mRNA upstream 18438 12993913 ~ 12997587 (-) True XLOC_028610
TCONS_00055498 mRNA upstream 60395 13035870 ~ 13255813 (-) False XLOC_028612
TCONS_00055499 mRNA upstream 60460 13035935 ~ 13156971 (-) False XLOC_028612
TCONS_00055500 mRNA upstream 60460 13035935 ~ 13255700 (-) False XLOC_028612
TCONS_00055491 other downstream 57752 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 190787 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055465 other downstream 376118 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 538906 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055457 other downstream 685856 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055502 other upstream 232636 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055510 other upstream 588192 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055533 other upstream 1191567 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 1201046 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 1213052 14188527 ~ 14189659 (-) False XLOC_028638

Expression Profile

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