RNA id: trnaw-cca-181


Basic Information

Item Value
RNA id trnaw-cca-181
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-181
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35335443 ~ 35335514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437804 lncRNA downstream 284 35334878 ~ 35335159 (-) True G2132016
TU2437798 lncRNA downstream 78369 35256687 ~ 35257074 (-) True G2132010
TU2437769 lncRNA downstream 209720 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 221506 35113693 ~ 35113937 (-) True G2131976
TU2437753 lncRNA downstream 222994 35111996 ~ 35112449 (-) True G2131974
TU2437806 lncRNA upstream 20910 35356424 ~ 35356686 (-) True G2132018
TU2437876 lncRNA upstream 50410 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 61503 35397017 ~ 35397255 (-) True G2132083
TU2437891 lncRNA upstream 72414 35407928 ~ 35408146 (-) True G2132089
TU2437893 lncRNA upstream 74959 35410473 ~ 35410862 (-) True G2132091
trnaw-cca-180 mRNA downstream 1488 35333884 ~ 35333955 (-) True trnaw-cca-180
trnaw-cca-179 mRNA downstream 3050 35332322 ~ 35332393 (-) True trnaw-cca-179
trnaw-cca-178 mRNA downstream 4612 35330760 ~ 35330831 (-) True trnaw-cca-178
trnaw-cca-177 mRNA downstream 6174 35329198 ~ 35329269 (-) True trnaw-cca-177
trnaw-cca-176 mRNA downstream 7736 35327636 ~ 35327707 (-) True trnaw-cca-176
trnaw-cca-182 mRNA upstream 1491 35337005 ~ 35337076 (-) True trnaw-cca-182
trnaw-cca-183 mRNA upstream 3050 35338564 ~ 35338635 (-) True trnaw-cca-183
trnaw-cca-184 mRNA upstream 4609 35340123 ~ 35340194 (-) True trnaw-cca-184
trnaw-cca-185 mRNA upstream 6168 35341682 ~ 35341753 (-) True trnaw-cca-185
trnaw-cca-186 mRNA upstream 7731 35343245 ~ 35343316 (-) True trnaw-cca-186
TU2437347 other downstream 817314 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 817314 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 849267 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1277173 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1292878 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 669975 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 680548 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 688266 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 688276 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 888699 36224213 ~ 36225379 (-) True G2132971