RNA id: TCONS_00055497


Basic Information

Item Value
RNA id TCONS_00055497
length 649
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_028610
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12993913 ~ 12997587 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGGTGTTGGAGTGTCCAGCATTCCTGCACATCATCCAGAGATAGTCGCATGCTTTTGCCAGAAGGGCTGAAGTGTGTTCTGataagtgacattaaaaggctctCACTGACTGTCACCTGCAGGAAAATTACTTTTATATCTTTAAAACGGTCAGAAAGCTTTGTTTTGACTGTGGTCAATCGTCGTGTTGTTTACAGAGAGCCACAGGTGAGCCTCGTGCTAAACGTGAGGTCTCTTGCGCCTCTAGCGGAGCGGAAGGGGAACTGCATACTTTCTACAAGACAGACTGAAAATGACTTCCAGGGTCCCTCTTGTGGTCATCAAGTGTATCAATCAATCTTCAAGCAGAAGTGGATGTCTGCTTTGCTCTGCTGCAGgcaaAAGCAGAAGCCTTTCTGGACACACTTCTGGAGCTCAGGGAGAGACACCACCATCCCCCTCTCAAACAACCACAGCTTTCACTCGTATTGTGGAGATGTGGAGTCTGTGCTATGAAGCCAGATTAGTGGCTGGCCAGTTCAGTTTCAGTTTAGGTTGCACCAATTCTGGCCTTTAGGTGCCACGAAGGAGCTCAGCTCAGCTCGGCTGCTCTATGATGCCAACAAAGAGTGATTAAAGTCCAGCTGCATTGATGTTACCTAAAtcta

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-128 No description available

Ensembl:

ensembl_id ENSDART00000140532

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058126 lncRNA downstream 4215 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00055494 lncRNA downstream 18438 12971922 ~ 12975475 (-) False XLOC_028608
TCONS_00055485 lncRNA downstream 110586 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055484 lncRNA downstream 110586 12873982 ~ 12883327 (-) True XLOC_028605
TCONS_00055482 lncRNA downstream 199731 12793735 ~ 12794182 (-) True XLOC_028603
TCONS_00057333 lncRNA upstream 25920 13023507 ~ 13024168 (-) True XLOC_028611
TCONS_00055501 lncRNA upstream 140418 13138005 ~ 13156743 (-) False XLOC_028612
TCONS_00057335 lncRNA upstream 348085 13345672 ~ 13393170 (-) False XLOC_028613
TCONS_00057334 lncRNA upstream 348085 13345672 ~ 13393170 (-) True XLOC_028613
TCONS_00058127 lncRNA upstream 479642 13477229 ~ 13478821 (-) True XLOC_028614
TCONS_00055493 mRNA downstream 14988 12971255 ~ 12978925 (-) False XLOC_028608
TCONS_00055492 mRNA downstream 63827 12917164 ~ 12930086 (-) True XLOC_028607
TCONS_00055490 mRNA downstream 79721 12892607 ~ 12914192 (-) False XLOC_028606
TCONS_00055489 mRNA downstream 79750 12892607 ~ 12914163 (-) False XLOC_028606
TCONS_00055498 mRNA upstream 38283 13035870 ~ 13255813 (-) False XLOC_028612
TCONS_00055499 mRNA upstream 38348 13035935 ~ 13156971 (-) False XLOC_028612
TCONS_00055500 mRNA upstream 38348 13035935 ~ 13255700 (-) False XLOC_028612
TCONS_00055503 mRNA upstream 501677 13499264 ~ 13502549 (-) True XLOC_028616
TCONS_00055504 mRNA upstream 509997 13507584 ~ 13509946 (-) True XLOC_028617
TCONS_00055495 other downstream 15014 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055491 other downstream 79743 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 212778 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055465 other downstream 398109 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 560897 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055502 other upstream 210524 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055510 other upstream 566080 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055533 other upstream 1169455 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 1178934 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 1190940 14188527 ~ 14189659 (-) False XLOC_028638

Expression Profile

//