RNA id: XM_021590047.2


Basic Information

Item Value
RNA id XM_021590047.2
length 3886
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110509088
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35516740 ~ 35575981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGAGGACGTGCTGTTCACTGGCGCAGACGTCAGCTGTGAAAGTGGTACAGCAATATAAACACTGACGGGGGGAGTCTTGTCCAGCCGTGCGTGTGGATTCTAAGTAGACTACCACACGGTGGAGCACAGCCCCGTCAAACTTTGTGCTGGTTTTAAACCCTGAACTGGAAAACAAAGTTATACATTCCCAACGAGCGCGCGGCCTATTTTGATCCACTTTTGGAAAACAAATTCCCCAGAGCAACAAGTGACTCTGCCATCAACTTTAATATATTGTTAGCCAACTCAGAAGCCCACATTTTTCAACTTTCCTAAAAATGCCAAGCACAAATTAGCTCTTGTTCAATCCACTGCGCGCGCTTGTGTAGAGAAAACGGATTGCGATGATCGTGTCCAACGTGAGCTTCAGCGGCTGCACGAGGGCCAATAGCGCGCTGTGTACTGGTGCTGCAGACAGGCACCTGGAACACAATTTATCCCGCACCACTCTCAGCCCGACCGGGAACCTGATAGTCTCAGTGTGTTTGGGCTTTATTGGCACCTTCGGATTCCTCAACAACCTCCTGGTTCTCGTCCTCTTCTGCCGTTACAAGGTGCTGCGCTCGCCTATCAACTTGCTACTGATTAACATTTCATTCAGTGATCtgctggtgtgtgtggtgggaacTCCGTTCAGTTTCGCGGCAAGTACACAGGGAAGATGGCTCATAGGAGAAAGTGGGTGTGTATGGTACGGCTTTGCCAATTCACTATTAGGCATCGTGTCCCTCATCTCCCTGGCCGTGCTCTCCTACGAGCGTTACACTACCATGATGGGTCCAACCGAGGCCGACTCCACCAACTACCGGAAGGTAGCCTTGGGCATCGCTTTCTCCTGGGTGTACTCACTGATGTGGACCCTGCCGCCGCTCTTCGGCTGGAGCCGCTACGGCCCCGAGGGGCCCGGCACCACCTGTTCAGTGGACTGGATGGCCAAGAGCGCCAACAATATCTCGTACATCATCTCGCTCTTTGTTTTCTGCCTCATCGTCCCCTTCCTGGTCATAGTCTACTGCTATGCTAAACTGATGCATGCAATCAAACAGGTTACCGCCATCAACACAGCTATGAGCAGGAAGAGGGAGCAGCGTGTTCTCGTCATGGTGGTAGTCATGGTGATGGTGTACCTGATGTGCTGGTTGCCGTATGGAGTCATGGCCTTGCTGGCCACCTTCGGACGCCCTGGCCTGGTCACCCCCGAGGCCAGCATCGTCCCCGCGATCATGGCCAAGACCAGCACGGTCTTCAACCCTGTTATCTATATCTTCATGAACAAGCAGTTCCACAGGTGTTTCCGAGCGCTGCTGAGGTGCCAAGAGCCTCAACGGGGTTCCAGCCTCAGGAACTCCTCCAAGGCACCGCCCAAAGCCGCCCGAGGCAGTGCCCGCAAAACCAACCAACACAACTTAACTTTCATGGTTGCCTCCCTTGGGCAGCCCACCAGCGATGTCCCCCAGCTGGGGAATGCAACCCTGGACTCAGCCGCCCCTGCTTACTCTGACATGGTCAGGCCCACCATTGTGTCGCTAGTGGCCCACTACAACGGCGGCCTGGGGCCAACAGGGGTTACAACCCCTAGGAACCAATtacagggaggggaggaggatccAGAGAAGTCGTCAAAGTGGATTTAGTGCTGTCAGTATGATGGACAGCAGGCTATAAAATCTGAATGCCTCCGGACTCTTTGGAAGTGGAGCCGCAGGAGCTGCTAGTGCATCTTTAGGAAGGACATCAATCTGTCTGGGTCTGCACAAGCTTATACATTCTGTCGCCGTTTACTAGCTCAAATACGCCTATGGACCGAGAGTGGGGAGAGAATGGTGCGAAGAACCCCAATTTATTTTGTGCAatttctaatgttttgtaaaaTATATTAGTTCCATGCCATGTCGATGTGATTTCACCCTCTGTCAGTGTACCTTTATAGTGcaaaaaaaacagagagagatgaagagtgtATTTTTGTACTGAGCGGAGATTGGAGTCACAGATTGAGGGAACTCAAGTATTGTATTTCAAGTATTTTCAGGAGACACGTTTCAAAGGTGTGACGATGACAAAGCGctcagaaaaaagaaaaaaaaattgaactgttAATGAATTCTGAGCATTGATCTATTGTTGTATTCCATTTTCTATCAAATAGTTTAAATTGGTTTCATCACTCGACACTTAAAACGTATTCAACTGTAACTAGTCACACGTTACTTGTTGTATATCATTTATCATAAACATAGGTAGCATGTCCGGTATGTATATTTCTTAATTTTATGTAAATATGCAAACGTATCACCAGGTGATAAAATGTGGAGGCAGGAGGTCCAGGgtacacttagaaaaaagggttcctaaAAGGTTATTTGGTTGTCTTACACCAAACTTGGCATGATCatcaatttcacagtattattccaacctcatagtgtgaaaatcacattttttttaaattgccctGGGCCTTTAAACAACTTTACAGCATTATGATACAATAGTTTGTTTCTATTCATGTGAAATATGATTGCAGATTTTATGATTTAGGCCTACGATTAGCTAGGTGtcgagacagaatgtgtctcacTGTAGACATGGTTAGATATCAACCCACTAAATTAGAATTGCTAACGTTAACATGGGCGTTACTCGCCACCCATCATCTTGATTGGTAATCAGCAATTACCCTTTTTATCACTACCACTACATCCCTGGTTACATTTTTTTGGGGCCAGTTTGTGTTACCCACATTTGGTCAAAACAAGAGACTTCCCGGTTAAGCCTATAATGACGTGAAATGATTGTAGTACACTTCTGTCGCATTGTAAAATGCTTCAAACACCACAGGCCTcatctatataaaaaaaatactttgaagttatCAATTAAAAGGTCTGACAGTAATTACCTGGAAATTATACAGTGATAATATATGAATTACTGCTAGCTACTTGCACTGCTAGCTAGTTTGTTTACTTTGACTAATTGGTCTAATTTGAATATCAGTTAAGTACTTTgggacatcaaactatgaaaatAATCACGTTTACATCATACCCAATTGGGTCTGAAGAATGTCAAAGTGCGCGGCTTGTTATGACATGACGGTGCAAAGAGGAAGTAGAGTCGTGGTTCAGAGCATGTGATCATATGAGTTTTACTATTACTGGCCTTGAGCCTTACATCATTTACTGTAGATGTTGGACCCCAACTTTTGAGGTTATACCCAGTGCTTCTGGTGGAAATTAAAATTTGGATTAGCGCAGCAGTAAGGAAGCCCACAATGGCCCACTTCATGTATAGTGAGTGCAGTATGAACAAAGCACACTTTCTGAATTATTTTCATTTTAACTGGAGCACATTGTTGTTCAAATCtgaaatatgtatattttttaaatgtaacctttatttaactagacaagtcagttaacttATTATACAATGAGCTGACAGGAGTCCCACATTTGCATATTGTTTGAAATGTGTTTGTTTGCTTAAAATCAGAGAAGTTGATGttacacaatttaaaaaaaacattaacaaTAGAATGGTTATGAAGGAGTTATTAAATGCTTGAATTGACCACGATGAATATGTGTAACCATTTGTAGTGGAATGTTATCTCACTGGGGGGAGAAAAATGCAttcaacactgtacatagatgtgTCCTTAACCAACTGACCACAGAGACAGTTGACTATGGACTGTAtcactgactgtatgtttgttttagaaatatataaataaatggacaGACCAGTTACAGTGCTTAAATAATGTTACAACAAAGTGAGAAGAATTTCATACTGTTTTGACGGTTGCGGTttaataaagttttttttatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437950 lncRNA downstream 14467 35502067 ~ 35502273 (-) True G2132134
TU2437910 lncRNA downstream 68545 35447956 ~ 35448195 (-) True G2132106
TU2437893 lncRNA downstream 105878 35410473 ~ 35410862 (-) True G2132091
TU2437891 lncRNA downstream 108594 35407928 ~ 35408146 (-) True G2132089
TU2437885 lncRNA downstream 119485 35397017 ~ 35397255 (-) True G2132083
TU2438059 lncRNA upstream 13184 35589165 ~ 35589433 (-) True G2132236
TU2438652 lncRNA upstream 129708 35705689 ~ 35705921 (-) True G2132752
TU2438654 lncRNA upstream 133105 35709086 ~ 35709337 (-) True G2132754
TU2438655 lncRNA upstream 134091 35710072 ~ 35710391 (-) True G2132755
TU2438660 lncRNA upstream 144999 35720980 ~ 35721273 (-) True LOC110508241
LOC110508240 mRNA downstream 87441 35391006 ~ 35429299 (-) True LOC110508240
trnaw-cca-200 mRNA downstream 150045 35366624 ~ 35366695 (-) True trnaw-cca-200
trnaw-cca-199 mRNA downstream 151599 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-198 mRNA downstream 153158 35363511 ~ 35363582 (-) True trnaw-cca-198
trnaw-cca-197 mRNA downstream 154717 35361952 ~ 35362023 (-) True trnaw-cca-197
XM_036966284.1 mRNA upstream 87935 35663916 ~ 35721385 (-) False LOC110508241
XM_036966282.1 mRNA upstream 87935 35663916 ~ 35737116 (-) False LOC110508241
XM_036966286.1 mRNA upstream 87935 35663916 ~ 35763569 (-) False LOC110508241
XM_036966285.1 mRNA upstream 87935 35663916 ~ 35780400 (-) False LOC110508241
XM_021590052.2 mRNA upstream 206168 35782149 ~ 35812072 (-) False tfr1a
TU2437347 other downstream 998611 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 998611 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1030564 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1458470 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1474175 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 429508 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 440081 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 447799 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 447809 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 648232 36224213 ~ 36225379 (-) True G2132971

Expression Profile