RNA id: TU2438014


Basic Information

Item Value
RNA id TU2438014
length 227
lncRNA type sense_over
GC content 0.49
exon number 1
gene id LOC110509088
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35516740 ~ 35575981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAACCAATtacagggaggggaggaggatccAGAGAAGTCGTCAAAGTGGATTTAGTGCTGTCAGTATGATGGACAGCAGGCTATAAAATCTGAATGCCTCCGGACTCTTTGGAAGTGGAGCCGCAGGAGCTGCTAGTGCATCTTTAGGAAGGACATCAATCTGTCTGGGTCTGCACAAGCTTATACATTCTGTCGCCGTTTACTAGCTCAAATACGCCTATGGACC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438013 lncRNA downstream 1167 35516905 ~ 35517612 (-) False LOC110509088
TU2437950 lncRNA downstream 16506 35502067 ~ 35502273 (-) True G2132134
TU2437910 lncRNA downstream 70584 35447956 ~ 35448195 (-) True G2132106
TU2437893 lncRNA downstream 107917 35410473 ~ 35410862 (-) True G2132091
TU2437891 lncRNA downstream 110633 35407928 ~ 35408146 (-) True G2132089
TU2438031 lncRNA upstream 27368 35546373 ~ 35546616 (-) True G2132208
TU2438038 lncRNA upstream 35838 35554843 ~ 35555153 (-) True G2132215
TU2438059 lncRNA upstream 70160 35589165 ~ 35589433 (-) True G2132236
TU2438652 lncRNA upstream 186684 35705689 ~ 35705921 (-) True G2132752
TU2438654 lncRNA upstream 190081 35709086 ~ 35709337 (-) True G2132754
LOC110508240 mRNA downstream 89480 35391006 ~ 35429299 (-) True LOC110508240
trnaw-cca-200 mRNA downstream 152084 35366624 ~ 35366695 (-) True trnaw-cca-200
trnaw-cca-199 mRNA downstream 153638 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-198 mRNA downstream 155197 35363511 ~ 35363582 (-) True trnaw-cca-198
trnaw-cca-197 mRNA downstream 156756 35361952 ~ 35362023 (-) True trnaw-cca-197
XM_036966284.1 mRNA upstream 144911 35663916 ~ 35721385 (-) False LOC110508241
XM_036966282.1 mRNA upstream 144911 35663916 ~ 35737116 (-) False LOC110508241
XM_036966286.1 mRNA upstream 144911 35663916 ~ 35763569 (-) False LOC110508241
XM_036966285.1 mRNA upstream 144911 35663916 ~ 35780400 (-) False LOC110508241
XM_021590052.2 mRNA upstream 263144 35782149 ~ 35812072 (-) False tfr1a
TU2437347 other downstream 1000650 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1000650 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1032603 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1460509 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1476214 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 486484 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 497057 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 504775 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 504785 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 705208 36224213 ~ 36225379 (-) True G2132971

Expression Profile