RNA id: XM_036966284.1


Basic Information

Item Value
RNA id XM_036966284.1
length 5049
RNA type mRNA
GC content 0.56
exon number 15
gene id LOC110508241
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35663916 ~ 35780400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgcgtctttcactctctctctttctatctatattGTCTCTCTTTCAGAGAAgagtctttttctctctctcggaacTAGATAGTTGGATAATTGAAAGCAGCACTCCAAATCCAATAGAGAAGAGGGCAGCCGGACATGTTTGACAGAAGTCAAAAGAAGTCTGTGTCCTGATGGTAGTTGTTTGACGTATAGGCTAAGCTATCAAACAAGACCATACAGCACTTCATACTGCCCTCTACACAGGGTATGGTTGAGAATGAGGAAAAAGAAGCTGGGCAGTAGCATGCAGTCTGAGGAGGGCACAGAATGGCTCCTGGAGCTGCTGATGGAGGTGCAGCTGCAGCAGTACCTTTTGCGTATCCGTGACGACCTTAACGTGACGCTCATCTCCCACTTCGACTACGTCAAAAACGAGGACCTGGAGAAGATCGGCATGGGGCGGCCCGGGCAGAGACGGCTGTGGGAGGCGGTCAAGAGGAGGAAAGCCATGTCCAAGCGCAAGTCCTGGATGAGCAAGGTGTTCAGCGGGAAGCGGACGGACGCTGGGGACTTCCAGCAGGCGGCCCCCACCTCCTCCTTCCGCAAGCTGTCCCCTACGCCGCCCCCCCAGCAGCAGACACTCAGCTGTCTGATCAGTGAGAAGGATCTGGTCCTCTTCCAGAAGCTGGGCGAAGGCTCCTTCGGCGTGGTCAAAAGGGGCGAGTGGTTCATGCCCGCTGGGAAAGTGtTGGAGGTAGCAGTAAAGTGTTTAAAGACAGACGTTCTGAGtcagccggacgctctggacgaCTTCATCTGCGAGGTGAACGCCATGCACTCCCTGGATCACCAGAACCTCATCAGGCTGTACGGGGTGGTACTCACACGCCCCATGAAGATGgtgacTGAACTAGCCCCGCTGGGCTCCCTGCTGGACCATCTGCGCTGCGTTCCGACGCAGGGCCCCGTCCTCATCCACACACTGTGCCAGTACGCCGTGCAGGTGGCGTGCGGCATGGCCTACCTGGAGCACCGACGCTTCATCCACCGCGACCTGGCCGCCCGCAACATCCTGCTGGCGTCGACCGAGACGGTGAAGATCGGCGACTTCGGCCTGATGCGAGCGCTACCCAACAACCACGAGCACTACGTGATGCAGGAGCACCGCAAGGTGCCGTTCGCCTGGTGTGCCCCTGAGAGCCTGAAGACACGGACGTTCTCCCACGCTACAGACACCTGGATGTTCGGGGTGACGCTGTGGGAGATGTGTACCCACGGACAGGAGCCCTGGCTGGGTCTCAGCGGcagccagATCTTACACAAGATAGACAAGGAGGGTGAGCGTCTGCCCAAGCCAGAGGACTGTCCCCAGGACCTCTACAACGTCATGCTGCACTGCTGGGCCCAGAAACCTGAAGACAGGCCCACTTTCCTCGCCCTCAGGGAGTTCCTGctcgagACCATGCCAACAGACATGTGTGCCCTGCAGGACTTTGATGAGGCTGACAAGCTTCAGATTCAGGTTGAcgacatcatcaccatcatcgaGGGCAGAGCGGAGAACTACTGGTGGCGGGGCCAGAACAAACGCACGCTGAAGGTGGGCCAGTTCCCCAGGAACGTGTTGACCTCCGTTGCGGGCCTATCGGCCCACGACATCAGCAGGCCCCTTGAACACAGCTTCATCCACACTGGCCATGGAGACTCCGACCCACATCGCTGCTGGGGCTTCCCAGACCGCATTGACGATCTGTACTTAGGAAACCCCATGGACCCACCAGATGTCTTGGGGTTGGACCTCAATGCTGCCCGGCCCACTCAGCTACTGGGACGAGCAAAAAAGCCATGCTACGACTCAGTGACTGAGGACGAGGAGCTGACCGCCTCAGGCCTCAAGAGGCTGTCGCTACGGAAAGCAAGTTCCATCCTCAAGCTCAAACCCGCCGCCTGGGTCTCCGCCTCCAAACAGGGGGAACGGACTACGGGTTCAGGCCACACCCCCAGCAAGGTGTCACTCATCGACTTTGAGCAGGAGTTTCCCCCGGccacaccctctccctccccagtgGCAGAGCTACAGTTGCCCTCATTGGTCAAGCTGGCCCTGGAGGCGGAGTCTATTCTGGACAGGACTCCTCCTCAGAGCCCATGGTGCTCGCTGCCTTGCCCTTTACACCCCACGCCAGTGGTGGACTGGGACGCCCGCCCCTTACCTCCACCTCCTGCGTACGATGACGTGGCGCAGGACGAGGAGGACATGGAGGTGAGCTCCATCAACAGCTTGGAGCAGCGACAGCAGAGGGGGATGGGTGAGAGCCACAGCCCCACGGAGGCCATCCCGGCTGGGGAGGAGGGGAAACCCCTGGGGGACAACCTCTTCTTACCCTCCCAGCAGGACCAGGCCTACACATCCTTCTCCCAGTCAGCAGAGATCTTTCAGGAGCTCCAGCAGGAGTGCATGAGGAGGCTCAATGTGCCCACAGGAGGAGTTCCCCAGCCCCCCTCTCCGTCACCGAGCTCAGGCCTCCAGTCCATAGACGTGCACCGCCATATCGTCCTGTCCTTCTCCGAGGACAAGCCCCAGATCCCTCCCCGCATTCCCATCCCACCTCGCCCCGTCAAACGAGGGGACTACACCCGCTGGTCCGGTGACCTCTCCCTGTCCCCGACTCCACCTTCAGAGGAAGTCCAGGACCGGCCCCCTCAGATCCCCCCACGGAACCCCCTGTCCCAGCCAGGCTCACGCACCCCCAGTCCCATGGGGCTCCAGGTGGGCTCCCCCCAGCAGAGGACAATGGTTTGCCCCAGCGCCCCTCCTCCGGCCACATACGGATCCTACCTCTCCACGTCCCCGGGGATGATCATGCCCACTACGCACAGCTTTGCCTCGGACCCAAAATACGCCGCGCTCAAGGTCATCCAAGCACAAGCCCAGGGTAAGGACCTGGCCAAGGGGCCATGCATCCTGCCCATTGTCCGCGATGGCCGCAAAGTCAGCAACACGCATTACTACCTCCTGCCTGAGAGGCCGCCTTACCTGGACCGCTACGACCGCTTCTTCAGGGAAGCAGGAAACATGCCGACCGGTGGCGGCGGTGGGATCTGTGAGGAGAGGCAGCAGGCCAACACGGCCACGGTCAGGCCCATGGTGGTGAACCAGCAGCAGCAGAGCAAAGGAGGAGATATCAAGGCCAACTTCTCcaacaacaacagcagtctgGGCTGCCGGCCGGGCATTAAGGCCTCCATCAGCCTGCCTAGGGTCAGCTCTGAGGGGTCAGCCAGCAGGGCAGCGGGTGGAATCACAACAGACCAGGTCAAGATGGTGCAGGAGGCGGTACATGGCGTGACTGTAGAGGAGTGTCAGACAGCCCTCCAGAACCACAACTGGAACGTGCAGAAAGCTGTGCACTACCTCAAGGTTGAGCAGCTGTTCTGTCTTGGCCTGAAGACCAGGCTGGAGTGTCTCAAGATGCTGGAGATGTACAACTGGAACCTGGAAGTGGCCAGCACTCAGCTCCTGGACTCCTACAGCTCTGTCACGCAAAGGCGGTGACCGATGCTAGGAGCAACAGCAGAACTTTTTTAAATCTGTCATCTGTCTTTGAGGGGACGGAGTCTGCTACCATCCCTCTTTTCTGACTTGCCAGACACGCCCCTTAAGAAGATGGGGATTTGAGTGTGGACCTGGGGTACATTTGACTGTGTGATGGGCCATGGCTGCAGTCTTGCCTACTGTACACTGAGACCTGGATaggtggtttccatgtggttgataccattccattgactccattccagacattattatgagccgtcctcccctcagcagcctccactgaggaCCAGGGGGTTAGCCTCCACACTGAGGGCCAGGAGGCTAGCCTCCACACTGAGGCCCAGGGGGCTAGCCTCCACACTGAGGCCCAGGGGGCTAGCCTCCACACTGAGGCCCAGGGGGCTAGGCTCCACACTGAGGACCAGGGGGCTAGCTTCCACACTGAGGACCAGGGGGCTAGCTTCGACACTGAGGACCAGGGGGTTAGCCTCCACACTGAGGACCAGGGGGGCTAGCCTCCACACTGAAGACCAGGAGGCCAGCCTCCACACTGAGGACCAGGAGGCTAGCCTCTACACTGTGGACCTGGAGGCTAGCCTCCACATTGTGGACCTGGAAGCTAGCCTCCACTGAGGACCTGGAAGCTAGCCTCCACTGAGGACCTAGAGGCTAGCCTCCACTGAGGAGCCTCCCGTTCTACCACCGAATATGAGTAGAAGTCGACTTAGAATACAGGTAGTGGAACCATACTCTTAAAGGGACCATGGTGTCTGCTGTTTCCTACCCTATACCCAACACTGAAGGAAAAACATCCTCTTTTTCACTGCTGGTCTCCCCGATTCAGTTATATCACTGCCACAATACACCATTGACCAACTAGGCTGACCTCTTTTGTGTCATTACTGACATATGAATCAGGGGAGCACTCCCCTACTGTATGTGAGCTTTGCTAAGCTCCTCGGATTGGACAGGCTTGTTTTAGCGAGGTCAGCATCTTTCTGCTGCGCCGCCCGCCCTCCCAGGCTCTACTGTGTTTTAGCAGAGGACAAAGTTCACAAAGCCCATAGAGAGAACGAATacaagagaggggaaggagaaaaaaaatgcagCTGGTCTACTTTTAAGTCGactcctttttttattttctattttagagATTTCTACTTGATTTATATTATTAAGGAGAGGAgttaacagattttttttttaatgcacacAAACAGTTACATACATGAATAGTTCAGTTCATATATTTGCAGCGAATATGTGCTAGAAGTTGGTATTTTTAGTTTTTAGTGTTCTGTTTTTAATATATTTTGGGTTTTGAACCGGTTGTTTGAAAAGGGGGACATTATGGAAAACATTCAATtcttcagattttaaaaaaatatatatattttgttagtTATTAAAAGCCATGTATGTTATGCTTTCCCTGAATCGAGTTCACTTATGTTTGTCAGTGACATCAACTGGACGTTAGTCTCAGACAATAAAGTGTATAACCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438059 lncRNA downstream 74483 35589165 ~ 35589433 (-) True G2132236
TU2438038 lncRNA downstream 108763 35554843 ~ 35555153 (-) True G2132215
TU2438031 lncRNA downstream 117300 35546373 ~ 35546616 (-) True G2132208
TU2438014 lncRNA downstream 144911 35518779 ~ 35519005 (-) True LOC110509088
TU2438013 lncRNA downstream 146304 35516905 ~ 35517612 (-) False LOC110509088
TU2438668 lncRNA upstream 7377 35728762 ~ 35729104 (-) True G2132768
TU2438680 lncRNA upstream 35953 35757338 ~ 35758059 (-) True G2132779
TU2438686 lncRNA upstream 45411 35766796 ~ 35767141 (-) True G2132785
TU2438688 lncRNA upstream 48633 35770018 ~ 35770232 (-) True G2132787
TU2438689 lncRNA upstream 49723 35771108 ~ 35771608 (-) True G2132788
XM_021590047.2 mRNA downstream 87935 35516740 ~ 35575981 (-) False LOC110509088
LOC110508240 mRNA downstream 234617 35391006 ~ 35429299 (-) True LOC110508240
trnaw-cca-200 mRNA downstream 297221 35366624 ~ 35366695 (-) True trnaw-cca-200
trnaw-cca-199 mRNA downstream 298775 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-198 mRNA downstream 300334 35363511 ~ 35363582 (-) True trnaw-cca-198
XM_021590052.2 mRNA upstream 60764 35782149 ~ 35812072 (-) False tfr1a
XM_021590049.2 mRNA upstream 60764 35782149 ~ 35813145 (-) False tfr1a
XM_021590050.2 mRNA upstream 60764 35782149 ~ 35813447 (-) False tfr1a
XM_036966684.1 mRNA upstream 112598 35833983 ~ 35841991 (-) False LOC110509089
XM_036966685.1 mRNA upstream 112598 35833983 ~ 35842022 (-) True LOC110509089
TU2437347 other downstream 1145787 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1145787 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1177740 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1605646 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1621351 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 284104 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 294677 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 302395 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 302405 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 502828 36224213 ~ 36225379 (-) True G2132971

Expression Profile