RNA id: XM_036966285.1


Basic Information

Item Value
RNA id XM_036966285.1
length 5334
RNA type mRNA
GC content 0.57
exon number 16
gene id LOC110508241
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35663916 ~ 35780400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTAGAAAAAAAGCAGGGTTGAGTGGATGACGTCTGCTCGAGCCGACGCAAGCAACGCTAGAATGTGGTCAATTGAGAATAGAAGAATAAAAACAAAATTAGCGACCCATGTTAAGTTTTCATAAGGAACTGGAGAGTTTCAAAGAAAGAGGCAGCCAAACACGCCTCGCCAGGGAGCAAtgccgtgagagagagagagaggagcagagatctACAGGCAGTTTCCAGAAACAGACCCCTGGGTGTGTGTTGTCGTGTGTGGTTTTCCATGGACGGGGATGTACGGGACCATGTGACCAGCTGACCTTTCCGCACAACATCGCAGCACCATGATGGACTCCTAGCCAGAGCTGTGCCTCGCCACGGACTGGGGCCTGCCGCCAACCAGTCCGTGGGTGACCTCTGACCTTCCCCCCCATACACAACCAACGACCACTAGACCTCGTATCTACTGTCCCTGAGAGTAGGCTTGTCCCCAGATAGAGGCCGAGGGTCGACAGACAGAAGGACACCTGCGCTCTGTCTTCAGATAGCAACCCAACAGCTAGCAGAAGCTGGGCAGTAGCATGCAGTCTGAGGAGGGCACAGAATGGCTCCTGGAGCTGCTGATGGAGGTGCAGCTGCAGCAGTACCTTTTGCGTATCCGTGACGACCTTAACGTGACGCTCATCTCCCACTTCGACTACGTCAAAAACGAGGACCTGGAGAAGATCGGCATGGGGCGGCCCGGGCAGAGACGGCTGTGGGAGGCGGTCAAGAGGAGGAAAGCCATGTCCAAGCGCAAGTCCTGGATGAGCAAGGTGTTCAGCGGGAAGCGGACGGACGCTGGGGACTTCCAGCAGGCGGCCCCCACCTCCTCCTTCCGCAAGCTGTCCCCTACGCCGCCCCCCCAGCAGCAGACACTCAGCTGTCTGATCAGTGAGAAGGATCTGGTCCTCTTCCAGAAGCTGGGCGAAGGCTCCTTCGGCGTGGTCAAAAGGGGCGAGTGGTTCATGCCCGCTGGGAAAGTGtTGGAGGTAGCAGTAAAGTGTTTAAAGACAGACGTTCTGAGtcagccggacgctctggacgaCTTCATCTGCGAGGTGAACGCCATGCACTCCCTGGATCACCAGAACCTCATCAGGCTGTACGGGGTGGTACTCACACGCCCCATGAAGATGgtgacTGAACTAGCCCCGCTGGGCTCCCTGCTGGACCATCTGCGCTGCGTTCCGACGCAGGGCCCCGTCCTCATCCACACACTGTGCCAGTACGCCGTGCAGGTGGCGTGCGGCATGGCCTACCTGGAGCACCGACGCTTCATCCACCGCGACCTGGCCGCCCGCAACATCCTGCTGGCGTCGACCGAGACGGTGAAGATCGGCGACTTCGGCCTGATGCGAGCGCTACCCAACAACCACGAGCACTACGTGATGCAGGAGCACCGCAAGGTGCCGTTCGCCTGGTGTGCCCCTGAGAGCCTGAAGACACGGACGTTCTCCCACGCTACAGACACCTGGATGTTCGGGGTGACGCTGTGGGAGATGTGTACCCACGGACAGGAGCCCTGGCTGGGTCTCAGCGGcagccagATCTTACACAAGATAGACAAGGAGGGTGAGCGTCTGCCCAAGCCAGAGGACTGTCCCCAGGACCTCTACAACGTCATGCTGCACTGCTGGGCCCAGAAACCTGAAGACAGGCCCACTTTCCTCGCCCTCAGGGAGTTCCTGctcgagACCATGCCAACAGACATGTGTGCCCTGCAGGACTTTGATGAGGCTGACAAGCTTCAGATTCAGGTTGAcgacatcatcaccatcatcgaGGGCAGAGCGGAGAACTACTGGTGGCGGGGCCAGAACAAACGCACGCTGAAGGTGGGCCAGTTCCCCAGGAACGTGTTGACCTCCGTTGCGGGCCTATCGGCCCACGACATCAGCAGGCCCCTTGAACACAGCTTCATCCACACTGGCCATGGAGACTCCGACCCACATCGCTGCTGGGGCTTCCCAGACCGCATTGACGATCTGTACTTAGGAAACCCCATGGACCCACCAGATGTCTTGGGGTTGGACCTCAATGCTGCCCGGCCCACTCAGCTACTGGGACGAGCAAAAAAGCCATGCTACGACTCAGTGACTGAGGACGAGGAGCTGACCGCCTCAGGCCTCAAGAGGCTGTCGCTACGGAAAGCAAGTTCCATCCTCAAGCTCAAACCCGCCGCCTGGGTCTCCGCCTCCAAACAGGGGGAACGGACTACGGGTTCAGGCCACACCCCCAGCAAGGTGTCACTCATCGACTTTGAGCAGGAGTTTCCCCCGGccacaccctctccctccccagtgGCAGAGCTACAGTTGCCCTCATTGGTCAAGCTGGCCCTGGAGGCGGAGTCTATTCTGGACAGGACTCCTCCTCAGAGCCCATGGTGCTCGCTGCCTTGCCCTTTACACCCCACGCCAGTGGTGGACTGGGACGCCCGCCCCTTACCTCCACCTCCTGCGTACGATGACGTGGCGCAGGACGAGGAGGACATGGAGGTGAGCTCCATCAACAGCTTGGAGCAGCGACAGCAGAGGGGGATGGGTGAGAGCCACAGCCCCACGGAGGCCATCCCGGCTGGGGAGGAGGGGAAACCCCTGGGGGACAACCTCTTCTTACCCTCCCAGCAGGACCAGGCCTACACATCCTTCTCCCAGTCAGCAGAGATCTTTCAGGAGCTCCAGCAGGAGTGCATGAGGAGGCTCAATGTGCCCACAGGAGGAGTTCCCCAGCCCCCCTCTCCGTCACCGAGCTCAGGCCTCCAGTCCATAGACGTGCACCGCCATATCGTCCTGTCCTTCTCCGAGGACAAGCCCCAGATCCCTCCCCGCATTCCCATCCCACCTCGCCCCGTCAAACGAGGGGACTACACCCGCTGGTCCGGTGACCTCTCCCTGTCCCCGACTCCACCTTCAGAGGAAGTCCAGGACCGGCCCCCTCAGATCCCCCCACGGAACCCCCTGTCCCAGCCAGGCTCACGCACCCCCAGTCCCATGGGGCTCCAGGTGGGCTCCCCCCAGCAGAGGACAATGGTTTGCCCCAGCGCCCCTCCTCCGGCCACATACGGATCCTACCTCTCCACGTCCCCGGGGATGATCATGCCCACTACGCACAGCTTTGCCTCGGACCCAAAATACGCCGCGCTCAAGGTCATCCAAGCACAAGCCCAGGGTAAGGACCTGGCCAAGGGGCCATGCATCCTGCCCATTGTCCGCGATGGCCGCAAAGTCAGCAACACGCATTACTACCTCCTGCCTGAGAGGCCGCCTTACCTGGACCGCTACGACCGCTTCTTCAGGGAAGCAGGAAACATGCCGACCGGTGGCGGCGGTGGGATCTGTGAGGAGAGGCAGCAGGCCAACACGGCCACGGTCAGGCCCATGGTGGTGAACCAGCAGCAGCAGAGCAAAGGAGGAGATATCAAGGCCAACTTCTCcaacaacaacagcagtctgGGCTGCCGGCCGGGCATTAAGGCCTCCATCAGCCTGCCTAGGGTCAGCTCTGAGGGGTCAGCCAGCAGGGCAGCGGGTGGAATCACAACAGACCAGGTCAAGATGGTGCAGGAGGCGGTACATGGCGTGACTGTAGAGGAGTGTCAGACAGCCCTCCAGAACCACAACTGGAACGTGCAGAAAGCTGTGCACTACCTCAAGGTTGAGCAGCTGTTCTGTCTTGGCCTGAAGACCAGGCTGGAGTGTCTCAAGATGCTGGAGATGTACAACTGGAACCTGGAAGTGGCCAGCACTCAGCTCCTGGACTCCTACAGCTCTGTCACGCAAAGGCGGTGACCGATGCTAGGAGCAACAGCAGAACTTTTTTAAATCTGTCATCTGTCTTTGAGGGGACGGAGTCTGCTACCATCCCTCTTTTCTGACTTGCCAGACACGCCCCTTAAGAAGATGGGGATTTGAGTGTGGACCTGGGGTACATTTGACTGTGTGATGGGCCATGGCTGCAGTCTTGCCTACTGTACACTGAGACCTGGATaggtggtttccatgtggttgataccattccattgactccattccagacattattatgagccgtcctcccctcagcagcctccactgaggaCCAGGGGGTTAGCCTCCACACTGAGGGCCAGGAGGCTAGCCTCCACACTGAGGCCCAGGGGGCTAGCCTCCACACTGAGGCCCAGGGGGCTAGCCTCCACACTGAGGCCCAGGGGGCTAGGCTCCACACTGAGGACCAGGGGGCTAGCTTCCACACTGAGGACCAGGGGGCTAGCTTCGACACTGAGGACCAGGGGGTTAGCCTCCACACTGAGGACCAGGGGGGCTAGCCTCCACACTGAAGACCAGGAGGCCAGCCTCCACACTGAGGACCAGGAGGCTAGCCTCTACACTGTGGACCTGGAGGCTAGCCTCCACATTGTGGACCTGGAAGCTAGCCTCCACTGAGGACCTGGAAGCTAGCCTCCACTGAGGACCTAGAGGCTAGCCTCCACTGAGGAGCCTCCCGTTCTACCACCGAATATGAGTAGAAGTCGACTTAGAATACAGGTAGTGGAACCATACTCTTAAAGGGACCATGGTGTCTGCTGTTTCCTACCCTATACCCAACACTGAAGGAAAAACATCCTCTTTTTCACTGCTGGTCTCCCCGATTCAGTTATATCACTGCCACAATACACCATTGACCAACTAGGCTGACCTCTTTTGTGTCATTACTGACATATGAATCAGGGGAGCACTCCCCTACTGTATGTGAGCTTTGCTAAGCTCCTCGGATTGGACAGGCTTGTTTTAGCGAGGTCAGCATCTTTCTGCTGCGCCGCCCGCCCTCCCAGGCTCTACTGTGTTTTAGCAGAGGACAAAGTTCACAAAGCCCATAGAGAGAACGAATacaagagaggggaaggagaaaaaaaatgcagCTGGTCTACTTTTAAGTCGactcctttttttattttctattttagagATTTCTACTTGATTTATATTATTAAGGAGAGGAgttaacagattttttttttaatgcacacAAACAGTTACATACATGAATAGTTCAGTTCATATATTTGCAGCGAATATGTGCTAGAAGTTGGTATTTTTAGTTTTTAGTGTTCTGTTTTTAATATATTTTGGGTTTTGAACCGGTTGTTTGAAAAGGGGGACATTATGGAAAACATTCAATtcttcagattttaaaaaaatatatatattttgttagtTATTAAAAGCCATGTATGTTATGCTTTCCCTGAATCGAGTTCACTTATGTTTGTCAGTGACATCAACTGGACGTTAGTCTCAGACAATAAAGTGTATAACCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438059 lncRNA downstream 74483 35589165 ~ 35589433 (-) True G2132236
TU2438038 lncRNA downstream 108763 35554843 ~ 35555153 (-) True G2132215
TU2438031 lncRNA downstream 117300 35546373 ~ 35546616 (-) True G2132208
TU2438014 lncRNA downstream 144911 35518779 ~ 35519005 (-) True LOC110509088
TU2438013 lncRNA downstream 146304 35516905 ~ 35517612 (-) False LOC110509088
TU2438644 lncRNA upstream 1770 35782170 ~ 35782661 (-) True tfr1a
TU2438717 lncRNA upstream 39375 35819775 ~ 35820085 (-) True G2132812
TU2438730 lncRNA upstream 63966 35844366 ~ 35844638 (-) True G2132824
TU2438731 lncRNA upstream 65640 35846040 ~ 35846366 (-) True G2132825
TU2438733 lncRNA upstream 67838 35848238 ~ 35848523 (-) True G2132827
XM_021590047.2 mRNA downstream 87935 35516740 ~ 35575981 (-) False LOC110509088
LOC110508240 mRNA downstream 234617 35391006 ~ 35429299 (-) True LOC110508240
trnaw-cca-200 mRNA downstream 297221 35366624 ~ 35366695 (-) True trnaw-cca-200
trnaw-cca-199 mRNA downstream 298775 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-198 mRNA downstream 300334 35363511 ~ 35363582 (-) True trnaw-cca-198
XM_021590052.2 mRNA upstream 1749 35782149 ~ 35812072 (-) False tfr1a
XM_021590049.2 mRNA upstream 1749 35782149 ~ 35813145 (-) False tfr1a
XM_021590050.2 mRNA upstream 1749 35782149 ~ 35813447 (-) False tfr1a
XM_036966684.1 mRNA upstream 53583 35833983 ~ 35841991 (-) False LOC110509089
XM_036966685.1 mRNA upstream 53583 35833983 ~ 35842022 (-) True LOC110509089
TU2437347 other downstream 1145787 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1145787 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1177740 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1605646 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1621351 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 225089 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 235662 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 243380 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 243390 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 443813 36224213 ~ 36225379 (-) True G2132971

Expression Profile