RNA id: TCONS_00055498


Basic Information

Item Value
RNA id TCONS_00055498
length 3610
RNA type mRNA
GC content 0.55
exon number 24
gene id XLOC_028612
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13035870 ~ 13255813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gatCTCTCAGAGCCAGGCTCTTTGTGAAACACAGCGCACACCTTCATACACACACGCTGGCTGAGTGCAGCGGTCTGCGTCTGGATCAGTGGGACTGCACGCGGTGGGCAGGCATGGAACGCTTTCTTGGCTTTGTCAAGCAAATCCGGCGGTCCAGGAGACGCAAAGGCAAAAAGTACCGCCCTGAAGAGGATTACCATGAGGGTTACGAGGACGTGTATTACTATGCTTCTGAGCACCTGCACCATGAGGGGCCCTACACTAAACACTCCAATCCCTCCAGGCCACCAGATGGCGCTCTGGCCATTAGGAGACAGAGTATTCCAGATGAGTTTAAGGGCACGAGCACTGTGGAGCTGATCAAGAAGGAAGGCACCACTCTGGGCCTGACTGTATCTGGAGGCATCGATAAAGACGGCAAACCCCGCGTCTCCAACCTGCGGCAGGGCGGCATCGCTGCTAGGAGTGACCAGCTGAACGTAGGGGACTACATAAAGTCTGTGAACGGGATCAACTTGACTAAGTTTCGTCACGATGAGATCATCAGTCTACTGAAGAATGTGGGGGAAAGGGTTGTGCTGGAGGTCGAGTATGAGCTGCCGCCTGTCTCTGTACAGGGCTCAGGGGTCATGTTCAAAAACGTGGAGGTGACGCTGCACAAAGAAGGCAATACATTCGGTTTCGTCATCAGAGGAGGCGCCCATGAAGACAGAAACAAATCTCGCCCAGTTACCATAACAACCATCAGACCCGGCGGTCCAGCTGACAGGGAAGGGACCATCAAACCAGGCGACAGGCTGCTCAGTATTGACGGAATTCGTCTGCATGGAGCGTCTCACGCAGAGGCCATGAGCATCCTCAAGCAGTGCGGCCAAGAAGCCACTCTTCTCATAGAGTACGATGTGTCAGTCATGGATTCTGTAGCCACTGCTTCAGGCCCGCTGCTGGTGGAGGTGGCCAAGTCAATGGGCTCCAGCTTAGGTCTGGCTCTCTCTACCTCCATGTACTGCAATAAGCAGGTCATCATCATCGACAAGGTCAAACCAGCCAGCATCGCTGATAGGTGTGGTGCTCTGCATGCAGGTGATCACATCCTATCGGTGGACGGCACAAGTATGGAGTATTGCACACTGGCCGAGGCCACCCAGCTGCTAGCTAGCGCTTCAGAACATGTCAAAATGGAGATTTTGCCGCACCACCAAACACGACTGGCTCTCAAGGGCCCTGAACATGTCAAGGTGCAAAGGAGTACCCGGCCATTGCCCTGGGAATCCGGaaccaacaacaacagcaacttcCTTCCCTATCAACACTATAACACCTACCACCCCGACCAGTCCCACAGCCAGGCCAAGAAAACCTCTCCAAGCAACCCCCCTCTGGGTTCATCGTTCTCTCCCACTTCCATGAGTGCCTACAGTCTGAGCTCACTCAACATGAACACGCTGCCACGCACCATGTATCCCACAAGTCCCCGCGGCACCATGATGAGACGCAAACTGAAGAAGAAAGACTACAAGAGCTCAATGTCTCTGGCTTCCAGCACTGTTGGACTGGCCGGGCAGGTGGTCCACACCGAAACAACAGAGGTGACCCTCATCAGCGACTCCATCATGGGCTTTGGGATCCAGCTCCAGGGAGGAGTCTTTGCCACAGAAACCCTGTCCTCTCCGCCACTCATCGCCTACATAGACCCAGACAGCCCGGCAGAGCGGTGCGGTATCCTGCAGATCGGCGATCGCATCCTGTCAATAAACGGCATCCCGACCGAGGACAGCACACTGGAGGAGACCAATCAGCTGCTGAGAGACTCCAGCATCACCAGCAAAGTCACTCTGGAGATTGAGTTTGACGTAGCAGAATCTGTCATCCCAAGCAGTGGGACGTTCCATGTGAAGCTACCAAAGAAGCCAGGTGTGGAGCTGGGCATCACCATCAGCTCTCCTTCCAGTAGGAAGCCCGGAGATGCACTCATCATCTCTGACATAAAGAAAGGCAGCGTGGCACACAGGACGGGCACGCTAGAGCTGGGGGATAAGCTTCTGGCAATCGACAATATCCGTCTGGACAACTGCTCCATGGAGGACGCCGTTCAGATCCTGCAGCAGTGTGAAGACCTGGTTAAACTAAAGATCCGCAAGGACGAGGACAACTCAGACGAGCAGGAGACCTCCGGCGCCATCATTTACACTGTGGAGCTGAAGCGCTACGGCGGCCCACTGGGCATCACCATCTCGGGCACTGAGGAGCCCTTCGACCCCATCATCATCTCCAGCCTCACTAAAGGAGGCCTGGCCGAGAGGACCGGTGCCATTCACATTGGTGATCGCATCCTGGCCATTAACAGCAACAGTCTGAAGGGCAAACCTCTGAGTGAAGCCATTCACCTGCTGCAGATGGCAGGAGAGTCCGTCACGCTCAAGATCAAGAAACAGGGAGAACTGCCAAGCCCAAAGCCGCCGTCAGTAACGGGACGTCTGAACAACCTGAGCGATCTGGAGGATGACGGTCAGAAGGCTGGAAAACTGTCTGACATCTATTCAACCACCATCCCCAGTGTGGACAGCGCAGTGGAATCATGGGACGGCTCTGCCATTGACGCCACCTTCAGCACCCAGGctCCCACAGGTTTCCAGGCATCAGGCTACAGTTTCCACAGCCACGAGTGGAGGAATGCCAAGCCCAGCCGGGGCAGCCTGTCACCGGTCAACAGCAGCCGGCAAAGGAACAACATCCTGCCAGACTTCGGCATTGGTGTGGATGACTGGGACAGGCCGAGCGCCAGCGGGTTCACTGTGGGACACGATGGGACGGAACCAGACCAGGAGGAGAACTTTTGGTCACAAGCGCTGGAAGACCTGGAGACGTGTGGTCAATCGGGAATCCTGCGAGAGCTTGAGGCCACCATTATGTCGGGCAGCTCTTTAAGTCTAAACCACGACCCTGCGCCCACCCGAAGCCATCTGGGCCGTCAGGCCAGCTTTCAGGAACGTGGCAGTAACAAACCACAGTACTCACAGGCCAACCGCAGCAACACGCTGCCCACTGATGTCGGCAGAAAAGCTTTCGCCATGAGGAGAATGAAGCAGGAGATCAAAGACATCATGTCACCAACCCCGGTAGAGCTTCATAAGGTGAGTCTTTTGAAAGACTCGGATCTTGAGGACTTTGGGTTTAGCGTGTCCGATGGAGTCTTGGAGAAGGGGGTTTATGTTAACAATATCCGTCCAGGAGGCCCTGCTGAAATTGGAGGCCTAAAGCCATACGACAGGCTGCTACAGATTAACCATGTACGTACTAGAGACTTTGACTGCTGCTTAGTGGTTCCCCTAATAGCGGAGTCTGGAAACAAGCTGGATCTAGTCATAAGCCGAAACCCAGTTTCTTCACAGCCCTCAGAACTGAACCCGTTGTCCAATGATGAGACAGTGAACTGGACTGACACTGGAGACCCTCTCGAGCAGCCGGTCGCAGGGCTGGAGCAGGGCCAGCACAACTCCACATTAGCAGGACTAGAAGACAGAGACCCCACCAAGACTTTATAGCAGAACTCCTCCCTGGTGCCTGCAGTGGAGCATTTCTCCTCATGGTGCTAAACTGAACCCTCCCC

Function

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0098887 neurotransmitter receptor transport, endosome to postsynaptic membrane biological_process
GO:0035259 glucocorticoid receptor binding molecular_function
GO:0030159 signaling receptor complex adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-125 Predicted to enable glucocorticoid receptor binding activity. Predicted to be involved in neurotransmitter receptor transport, endosome to postsynaptic membrane. Predicted to act upstream of or within dendrite development. Is expressed in brain; eye; median fin fold; and somite. Human ortholog(s) of this gene implicated in Fraser syndrome 3. Orthologous to human GRIP1 (glutamate receptor interacting protein 1).

Ensembl:

ensembl_id ENSDART00000026593

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057333 lncRNA downstream 11702 13023507 ~ 13024168 (-) True XLOC_028611
TCONS_00058126 lncRNA downstream 46172 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00055494 lncRNA downstream 60395 12971922 ~ 12975475 (-) False XLOC_028608
TCONS_00055485 lncRNA downstream 152543 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00055484 lncRNA downstream 152543 12873982 ~ 12883327 (-) True XLOC_028605
TCONS_00057335 lncRNA upstream 89859 13345672 ~ 13393170 (-) False XLOC_028613
TCONS_00057334 lncRNA upstream 89859 13345672 ~ 13393170 (-) True XLOC_028613
TCONS_00058127 lncRNA upstream 221416 13477229 ~ 13478821 (-) True XLOC_028614
TCONS_00057336 lncRNA upstream 233950 13489763 ~ 13490081 (-) True XLOC_028615
TCONS_00055513 lncRNA upstream 349794 13605607 ~ 13614821 (-) False XLOC_028623
TCONS_00055497 mRNA downstream 38283 12993913 ~ 12997587 (-) True XLOC_028610
TCONS_00055496 mRNA downstream 38522 12993913 ~ 12997348 (-) False XLOC_028610
TCONS_00055493 mRNA downstream 56945 12971255 ~ 12978925 (-) False XLOC_028608
TCONS_00055492 mRNA downstream 105784 12917164 ~ 12930086 (-) True XLOC_028607
TCONS_00055490 mRNA downstream 121678 12892607 ~ 12914192 (-) False XLOC_028606
TCONS_00055503 mRNA upstream 243451 13499264 ~ 13502549 (-) True XLOC_028616
TCONS_00055504 mRNA upstream 251771 13507584 ~ 13509946 (-) True XLOC_028617
TCONS_00055505 mRNA upstream 261633 13517446 ~ 13518381 (-) True XLOC_028618
TCONS_00055506 mRNA upstream 279241 13535054 ~ 13538714 (-) True XLOC_028619
TCONS_00055507 mRNA upstream 288782 13544595 ~ 13548806 (-) True XLOC_028620
TCONS_00055495 other downstream 56971 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055491 other downstream 121700 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 254735 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055465 other downstream 440066 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055464 other downstream 602854 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055510 other upstream 307854 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055533 other upstream 911229 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 920708 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 932714 14188527 ~ 14189659 (-) False XLOC_028638
TCONS_00055543 other upstream 935239 14191052 ~ 14191984 (-) True XLOC_028638

Expression Profile

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