RNA id: XM_036966685.1


Basic Information

Item Value
RNA id XM_036966685.1
length 3959
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110509089
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35833983 ~ 35842022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCAGTGTTTACGACCTTTTTACGACAAAAGGTTATTTATTTCCCGTGTTTACATCCAAACCTTGTTCAATACCAGAGATGCCCAACGCTATATAGTTGCAAATGCAAAAACGGCATCGGATGGAAGCTTTGAGAGACGGtctccccctatcaTCTCTGCGTCTGTTGGTTCCTCCCCTGCGGCTGGTGTCTGCAGCTCTATGGCAAGTTGTTCAGCAGAGAGACGTAATGGACTACGGGTTGGTGGAGGAGTTTGTCACCACTGTGTTGGAGAGAGTTCCTGATATGATGAGTTACAGGGAGAGAGTCCAACTCATCATGGGGCTGCGAGCACAGCTGGTTCTGGAGTTGTGTCGCTCTGATCACCTAGCCAACCCTGAGACCATCCAGCCACATCTGAATAGGATGAAGACCTGTATCATCACCCATAGGGGCAAGGAGATTTCTGATCCAGAGGTGGAAGCGTCAGAATCAAACTTCCTGAAGCTGATTCAAACTCTGCTGGAAGACCCAGTCGAGAAGGAATACTTCTTTCAGAGTGTGTTTTCAGAGGAATTTGGCCCCAAGTATAACTCAGCACTGCAGACTCTGGTGTGGGAGTTCCTCTCCAGGCTGGAGAAGCTGCTTCCAGCACCAACCCTTCAACAGACGGCATCTTGGTTCCTACCTGACCCCTCTGTCCTGGAGGAGTGTGTGCAGTGTGTATCCCACCCTCAGCCTTTGAAGACCCTTCTCCAGCACCACAACAacacatgtagacatgtagacaccaATGGTCTGTTTTCTGGCGACAATCAAATCCCAATCGAAGCTGACCCAGAGGTCCAATCAGAACCTGTGCAGCAATGTATGAGCCATGTCTCATCTGACAATGAGTCAGACATGACCCCTTTGTTGGAACTGGGGATTGATTCAGACCGAACTGTGCACAAAGGGGTGGGGCCTGTGCACAAAGGGGTGGGGCCTGTGCACAAAGGGGTGGAGCCTGTGCACAAAAATATtaaacacaacacaccaggtAAAGAGCTAGCAAAATATATGCAAAATAATAAATATTTTCACTACCTTAACACTGACAGTGGGCTGAAAATCCAAGGAAAAGCCCACAGCAGCCAACAGGAAGTGCAGGACATTTCTAATGTATCTACTTCCTGTCAGCTCCATCAGCCAACAGTGCTGCTGCACAGACTTGACATTGCTGATATGCTTTTACCTGTGACGGAGGTCTCTTCAACACCGAGGAGAGAGAGGCTTCAGATTGACAAAGTGGGATCccaaggacagagaagaggacaggTCATATCACAAAAGAGTGAGAGGAATATCAATGAAGAGCCCTCTGATGGTCAACCTCAGTATTCTCTGGCCCCTGACCCATCCCTTACCACAGGACAGCCTAAAAGAAGCAAGCGTGTCAAAATATGCTCCTTGTGTGGAAAGACTTTCAGCGAAGCAAAGGATTTGACGGCACACATGAGATGTCACAATGAGCAGAGCCCTTCCAAGTGCACCCAGTGTGGACAAGACTTTGAACACCATGAGGACTTACAGAAACATCAGCAGAATGTGTGTGAGGCGGCAGCTCAACCAGAAGAGGACAACATGTCTACGACATCTGTGGAGGATCAGACGGAACTAGCATGCACGGAGCTATCAGAGTCGTCCAAAGCCAGGACTTGCCGTGTGTGTCATAAAACTGTCTATAGTAGAAATTATTTGAGAAAGCACCTGAAATCCCAACACGGTCAACTCCTGAAGATGCGTAAGAAACACAAAAATATTATCTGTTGCATTATGTGTAATAAGTCCTTTGATATTTCTGAGCCAAACAAGTGTGAGGTGAACCAACAGCAACTCCCCAGGAAGGCACACCCAGAGGCCAACACACTTATTGCTGCAGTGATACCACAGCCCTCAAGCACTCCATCCCAGAACCCAACAACCTCCAATGCTCTGCCCATTCAGGCACAGTTCTACAATGACTACAGAACATGTCTTTTGTGCAATGAAACTTTCGATACCGCAGAGACCATGAGAAAGCACCTAAGATTTCAACACAATATACTGTCTTACTTGTGCCACGATTGTGGGGAAAGTTTCCCAAGCAAATTAGATCTTCAGAAACACTCAAATAATTGTTTGAGTATTCCAGATTCAAGAAAATGTCATGAGTGCAGGAAAATTACTCCTCAAACAACGCAGCCGCAAGCAAACATTTGTCAGGAGATGAACCAAAGACAACAGCAACTACCTGCAGGGGGAAATGAGATGGAGATCCCTCAGTCCTCCAACACAGACGTTAACTCATTAAATGACTTGCAGCAATGCCAGCCAAATGAGTGTGAGAAGATTCACTTTCAGGGAGGGCAGCAAGACTGGAGTGAGGAGGTTGATCCAAACCAGCATCCAGAGGAGGTTGATCCAGAGGAGGTTGATCCAGCCGACAGAAGCAGTTCTCTGATTCCAAGGGAGAATGGGACAGAGATTCCCCAGAGCCATAGCACTTCACCCCAGAACCCAACAACCTTCGATGCTCCCCCCACTCAGACGCAGCCACCTGGCATCTCTCCCCCAGCCTCGCTAAAATCTAGAACATGCCCTTTGTGCTCAAAATGTTTTGCTTATAAAAAGACCATGATGCAGCATCTGAGACGTCATTCACAGGGTCAGGGACCCTTCATGTGCACCACATGTTCAAAGAGCTTTGGTACCGCCAGCGATTTGAAGAGACATCAGGGAATTAAGAGCGGTTGTGGGCCAAATCATCGAAATCTCGTCGTACCTGAGAATGTTCCCACAGAACAAAAAACTGTCTTCTCCTGCCCCCATTGTCGGGGACAGTACACGAGTGAAAAGAAATTGAAAGCACACATGGTATGTCACACAGGAGATGGGTTCACCTGTAGGTTTTGTGGCAAGATATTTGCTGAAGATAAGAAATTACGCAATCATGTTCGTTCTCATATTGACAGACGACATCTATGTGACACATGTGGTAAAGATTTTACATCTCTGTCTAACTTGAAAAAACACACACTTGTACACACGGGAGAACAGCCGTACATTTGCACAGACTGTGGCAAACGTTTTAGTCTGAAGGGTAACCTGAAAGTCCATCAACAGAGTCATACAGGAGAGCGGCCATTTGCGTGCACAATGTGTAAAATACGCTGTTTCACTCAGACTCATCTAAAACGACATATGTTGaggcacacaggagagaagcctcatAAGTGTTTGGCTTGTGGGAAGACATTTCAACGGAAAAACACATTGAGGAAACATCAGCAAGATTCGTGTTCTTAGTTCTTGGCTTTTACACACTGCCTTCTTGAGAGGCAGACTCAGTCATACTTTTTTTTTCGCTCAACATTGATTACATTTAGTTGATGACATTAATGGCTTGCAATTGGTTGTAGGTTCTAGTCAACAGACAAGTAGGCATCCATCTTTTGCTACTTTAACTTTTTGCATATTTGTAATATCTAgccgttttgtgtgtgtgtgtgtgtaaaggataTTGTCAATGGGTTGCTGTACAATGCTGAcagaaaaataatatatattctgTTTTGTGTCAAATGTTGCCTTTTTTTCTGTCAGCATTGTACAGCAACCCATTGACAATATCCTTGACAAACTGCAAATGTAAGTCTACAAGAGAGATTGAAATAAGCACAACATAGGTAGACCGTATGCATTTTGAATGTAAACAAGTATAAATTGTCACCCCTCCATTTTGTTATTGTGTTTAACAATGCTCATGTGCTGTGATCTTATTTACTATTATGTATTGATTTCTTCTTCAGTCTTTATGGGATGTGCACTGCACAGAACACAGGAAGTATAATGACTGAATTATCACggaattattgtaatgtttgtgtCAGTTTAATCCTGTAAGGGATGGATTGCCAACTGGCAATTTgacacaaaaataaaatgtaattcacCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438717 lncRNA downstream 13898 35819775 ~ 35820085 (-) True G2132812
TU2438644 lncRNA downstream 51322 35782170 ~ 35782661 (-) True tfr1a
TU2438703 lncRNA downstream 55377 35778353 ~ 35778606 (-) True G2132798
TU2438699 lncRNA downstream 58633 35774336 ~ 35775350 (-) True G2132794
TU2438697 lncRNA downstream 60055 35773598 ~ 35773928 (-) True G2132793
TU2438730 lncRNA upstream 2344 35844366 ~ 35844638 (-) True G2132824
TU2438731 lncRNA upstream 4018 35846040 ~ 35846366 (-) True G2132825
TU2438733 lncRNA upstream 6216 35848238 ~ 35848523 (-) True G2132827
TU2438696 lncRNA upstream 8460 35850482 ~ 35852434 (-) True G2132792
TU2438748 lncRNA upstream 23826 35865848 ~ 35871224 (-) False LOC110509091
XM_021590050.2 mRNA downstream 20536 35782149 ~ 35813447 (-) False tfr1a
XM_021590049.2 mRNA downstream 20838 35782149 ~ 35813145 (-) False tfr1a
XM_021590052.2 mRNA downstream 21911 35782149 ~ 35812072 (-) False tfr1a
XM_036966285.1 mRNA downstream 53583 35663916 ~ 35780400 (-) False LOC110508241
XM_036966286.1 mRNA downstream 70414 35663916 ~ 35763569 (-) False LOC110508241
XM_036966073.1 mRNA upstream 28134 35870156 ~ 35925783 (-) False LOC110509091
XM_021590059.2 mRNA upstream 160831 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA upstream 160831 36002853 ~ 36013047 (-) True rpp40
XM_036966844.1 mRNA upstream 174064 36016086 ~ 36017873 (-) False lyrm4
XM_036966480.1 mRNA upstream 181692 36023714 ~ 36025735 (-) False LOC118944844
TU2437347 other downstream 1315854 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1315854 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1347807 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1775713 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1791418 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 163467 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 174040 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 181758 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 181768 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 382191 36224213 ~ 36225379 (-) True G2132971

Expression Profile