RNA id: TU2438748


Basic Information

Item Value
RNA id TU2438748
length 5263
lncRNA type sense_over
GC content 0.38
exon number 3
gene id LOC110509091
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35865848 ~ 35925783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAAAACAGAAGTGAGAAGCGATCTCTCTTTCTACTAAACAGAAGTGAGAAGCGATCTCCCTTTCTACTAAACAGAAGTGAGAAGCGATCTCGCTTTCTACTAAACAGAAGTGAGAAGCGATCTCCCTTTCTACTAAACAGAAGTGAGAAGCGATCTCCCTTTCTACTAAACAGAAGTGAGAAGCGATCTCCCTTTCTACTAAACAGAAGTGAGAAGCGATCTCCCTTTCTACTAAACAGAAGTGAGAAGCGATCTCTCTTTCTACTAAACAGAAGTGAGAAGCGATCTCTCTTTCTACTAAACAGAAGTGAGAAGCGATCTCCCTTTCTACTAAACAGAAGTGAGAAGCGATCTCCCTTTCTACTAAACAGAAGTGAGAAGCGATCTCTCTTTCTACTAAACAGAAGTGCCAACCAACTCAAGCCAGATAAGACTATGCTAGGAGAGCTACTATATTTGGCCACTtcaatgcctctgtctctccGCACAGATGATGTCAATGGCCTTGTTTAGAATTATAGCAAGAGACAGTGGACAAAGTAAGCAATACGAGGAACATAAAGGTCTTCAACATTTACTGCTGCATTGAGGCCTTTTTGTCCATAATAACCTATTGGGCTCCATTTTACACACGCAGCGCAGCCTTGGCAATGACCCCATAAAGAAAACTAATCTAAAACTCTCACTCTCACATGCAAGGTGCGGGTACAGAcacattgagattttgtgtcccAAGATTCCAGGATTGAGACAATGGTTTTTCAATGGGGAGGTCATCCTCTGCTTGATGAATGATTGTCCAACGGAAGGGAAAAAAAAACTGCAAAATATGTTAAGTCTTCTACATATACAAGTCATCCGGAAAAAAAGTAGGGATGAGTTAAACTTATGACAAGAACGGACAATGATGTAAGTCATATACAATTTTATCCGTGTTCATGCTTCTCTGTTAGGGTTGGATATTTTCCTGGTATTTTAcaaataaatcacttttctcccCGGTAAAATCATTTATAAAGCATATAAATATGCCTATGTCTGGATTTGAATAGACCGTTGAGCGAAAATTCAAGTCTGATGCGCCAtatacattaaagacatttaatgagcccaagccaccaaaacaaacacatgatTGTGCGGTTATCAAATATATATGATATAGTTTACTGCACATTACGCAcgacagaaaaacataaaagcccatTGATGTAGTTAGTTTCATTTATTTACCCAACAGAGCATATAGCTAACTCCAGTAGGCTAATACTTCCTGAGTGTGAACTGTATAATATCGACTGGAATTACACACATCGATCAAACTGTGATAAAGCGAGGAGAGAACATGCGATTCCGGTGCAGCACATGCGTCTTGTAAAGTTACAAGTACAGGTTAGCGAAATAGTTTTTAATTTTGAAGTATAATGGGGCCTATTTGTATAATTTTAGTCGACTGACCCATATATACCTTTAAATAATATTTCCTCCTAATGTTATTAGCATATTATATTTGTTtttgcttccttccttcctctctttcaacTGTTAAATGAAATACGTTTCGTTGTCCTTTATTCTCATAATTCTCAATGACATCCTTGAACAATATAGGACTCGAATTAGATGCagaaggctttcacttctcttcacaAAGATAGAATGGtcatgggtctgaataaataactgctatagccgACCGACATCGCGCGTTCGCTCTTTCAAATTAGTTATACTGGCTGCTGTATTTACCATTCAGCAAACaagcgcaccagtccctcttcAAATAGTCTATTGGTATAAGAAATGCTTAAAGAAAACGTCcaagctattctagtctagcttCTCCTGCATGGGACTCCAACAGCTAAGGAGCGTGTTTTTAAAGAGGCCAGCGGAGCACGGGTGTGCGCGTATTGCGCAAGAGACAGGGGCTATAAATTAGAACCTAATtatgcataacccatcattaattaGCTAAATATAGGGCAAGTACTGCATTGAATGtattacctgaaagaggtaggctaggatatatatatatatatatatatatatatatatattggatgcaatttgaatggagttAGAGCGAGAAGGACGGTGTGCTCGCACGTGCACAGATGTTTTTAAAACTGCAGCTGCAATAAAACAATTATCTTTACAATTAAAACAACTAAAAGTGATCCCTAAAGCCAGATGTAAAGACATTCagtctttatattactgtagcatagacTATGCTGCAGAAAATGCAGGCCTACCATCACAATATATTTTGTGTTTACCATGACATGCTAGATCTACATCCATTGTGAACTGCGGTCCATACTGATGTTCCCTGAGCGTTGATTTATCATGCAGATGCCGTAGAGAAACCAGATTTTAGACATTGGGTATAATTTACGTTCCATTCACgccatgctgttcatataaataaataatttattagCATTTTCCGGTTTCTCGCAGTTATTTATCCCGAGAAAAGTGTGTGGTTTTGGGCCGTGAATCTCAGTAACCGGGTTCCCGCCATTCAACCCTAGTCTCGGTGTGTCCATTCCCCTTACGCAAGTCGTAACTTTTCGTTTGCGATGTCTGTGAGAAAGCACAGATTATTGAAACATCGTTGAAGCACATAACACTAAAATGTGAAGCGCGTAATTCAATCTCGATTATTATTTTTCAAACGTTACCGAGGCTACGCTGCGTATGTCACCCAGGTATGTTTCAATGTTATAAGGCTACGAACAAGATGCACAAAATTAGCATGCATGTTGTATTGCTTAGTTACTTtacaccatgtgtatgtgacaaatacaatttgattatgACCACTTCACCGCGTGAGTGTTATTAGTCTTTCATAGGTCACACTCTGACCATCACCGTTTCTGAGGAGACCGAATCTGTGTTCCCGGCAGACAAAATTGACATGGAACAAGGATGGTTTTTAAGGTTGTTTTTGTtagtctttttttctttttttttagcaAATTAAATAATGTGTCTGGTAATCTGGTTGTAAACATAGCTTCTGACCAAATCACAACCAAAATATACAGTCTTTTCCATGACTTCTTTACCTTGTCATGAAAACATTTCTCGGTTTCTCTTGCTTTACCTGGTTGTAAAAGAGACCCGTTGGTTGTAATCTGGTTATATAGGACGTCTTCTCAACCAGAAAACTAGTTAACAACCAGAAAATGTCATAGACCATGAGCAAAATGTCCACTGGGTTGATACCATAAATCAAACACTACTTCTGTCTTTGTGTCCGACCTAACACCTTTGCTCAATTGCAGGGAAAGTCTGGGTTAACGACAGATCTTCCATACTAAATGTCAGACATTGAACCTGTGAAAATAACTCAAGTTTTAAACTGGAGACAATAGAATAATTTGCCAGCAATCCCTTACACAGTATGCTGCGTTTCTCTTTCTAAGAATGAAAACCCTATCAAACTGAGAGGAAGACTTACCTCACAATTTGAATTCATACATTTTTCTGCCTCATTGATATGATCATCATTCCTTTCCGATCTTAATATTTTGCTCGGTCCTTAATGTCTTTCAGTGGAAAGTCAGACCTACAAGAGCTTCTGAATTCAATTCACTGTTGAGAAAAtgtacctttttaaaaaaaaatcataactTGCAATATGCCTTTTCCATGTTGCTGTGTGTTTTTAGTCTGTATGAACAAATGTTACATGTATCCACATTGGAATAttcagttttttttgtgtttttgcatTTGTTGAAAGGTCAATCTTTTTAACTTGGTTTGATAGGCTACACTATGGCAATTTAGTTGCtaattatttacctcagattttTAGCTTGTTGACTGTATGGTTCATTATACATGCATGACATACTATTAATCGATTTTAGCTGCAATCAAGCCCAAGTGCCTCACTATACACTAGTGCAGCGTTTTTCCCAAACTttgtcctcgggaccccaaggggtgcacgttttggttttgcccccaacactacacagctgactcaAATAATTGacgcttgatgattagttgaatcagctgtgtaatgctaggggcaaaaaaaaaaaaactaagcgCAACAACCCTTGGTGTCCCGAGGACCGAGGTTTAGGGAAACCCAGAACTAGTGTTACACAAACCAACTTTAATGCAAATTTAGTTGCCATTGAGCTCCCTTACTGGGCTGTGTGGAACATGCATGAGCCTCAATTTCCATTGTGTAAGCCAGCATTCATTTAGTACACATACCATGAATTTGTAAAACATTGTGGGTTCTGTTCCGCTTGAAATATTATCAGATACGGCTTATGTTGTAATATCTACTTGATTATATAACCGTCCAGTTGATCAAAACCAATGTGCTGGCATGTTGTATGATGAATGTTAAACTCATTTGATCAGTAATCTTTGTTACTCCGTTGCCCATAACTGGTCGGTACTGTGCCTCCGTAGACCTATTTTTGGGGGTCAAGCATGTCCTGTCCACACTGTATACAGGAGTGGATGTCTTGAGTTGAATTGTACTTGAGCACGCTGCAATCAAGTCACtctagccctgtttatacctggtgctaacatgcaGCCTTTTTCCTGCTCTTATCACCACATTCTGATTCTGCCCAATTTTTTTTTTGACAAGTgcagattaaaaaaatatatatatatatataaaaaatgcatTGTGATCTGATAGGTGTAAACAGACAAGATCAGGACGAAGGACACATGTTAGCGGCATGTGTAAACAGGTTCAAATAAGGTTCTCATTTCAGCACCACCGATGGATTTATGTCTACATTCCATATTGTAGACAATGATCATTTTCTTGGTGAAATTTGGAGGGGTGAGGCTGTATCATCGATAATTGAAAAATAACTAAAAACAAATGAAAGGCCTAACACATCCTCTTCCTTTGTCTGTTTAGCTAAATTACAGCTCTCCTTGTATTGAGTTGCTTCTTTCTGCCTTGTTCTGTTTGTACAACTCATGTAAAATATTGTACAATAAAAAGTATTGAGTATAGATGAGGCAATAATGTTgcattttgttttttattttgttgaaCTAAAAATCTGGGCCCAGAGTTGAGCTATGGCTTCTGTTATTACACACGTGGGCCTGCCATTCCTCACACATCAAACACAACATGAAGCCTAATCCCGTTCAAAAGACCATTCCGCCCAACGCTCGGAAAGTCTGGTGGATCAACGTGTCAAATGTGGCCTTCAATGTATTCGAAATAGGAAAAGTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438696 lncRNA downstream 13414 35850482 ~ 35852434 (-) True G2132792
TU2438733 lncRNA downstream 17325 35848238 ~ 35848523 (-) True G2132827
TU2438731 lncRNA downstream 19482 35846040 ~ 35846366 (-) True G2132825
TU2438730 lncRNA downstream 21210 35844366 ~ 35844638 (-) True G2132824
TU2438717 lncRNA downstream 45763 35819775 ~ 35820085 (-) True G2132812
TU2438770 lncRNA upstream 10609 35881833 ~ 35882121 (-) True G2132841
TU2438807 lncRNA upstream 125643 35996867 ~ 35998894 (-) True G2132876
TU2438834 lncRNA upstream 130080 36001304 ~ 36001673 (-) True G2132903
TU2438841 lncRNA upstream 147709 36018933 ~ 36019457 (-) True G2132910
TU2438842 lncRNA upstream 148914 36020138 ~ 36026003 (-) True G2132911
XM_036966685.1 mRNA downstream 23826 35833983 ~ 35842022 (-) True LOC110509089
XM_036966684.1 mRNA downstream 23857 35833983 ~ 35841991 (-) False LOC110509089
XM_021590050.2 mRNA downstream 52401 35782149 ~ 35813447 (-) False tfr1a
XM_021590049.2 mRNA downstream 52703 35782149 ~ 35813145 (-) False tfr1a
XM_021590052.2 mRNA downstream 53776 35782149 ~ 35812072 (-) False tfr1a
XM_021590059.2 mRNA upstream 131629 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA upstream 131629 36002853 ~ 36013047 (-) True rpp40
XM_036966844.1 mRNA upstream 144862 36016086 ~ 36017873 (-) False lyrm4
XM_036966480.1 mRNA upstream 152490 36023714 ~ 36025735 (-) False LOC118944844
XM_021590063.2 mRNA upstream 172817 36044041 ~ 36052174 (-) False LOC110509099
TU2437347 other downstream 1347719 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1347719 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1379672 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1807578 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1823283 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 134265 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 144838 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 152556 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 152566 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 352989 36224213 ~ 36225379 (-) True G2132971

Expression Profile