RNA id: XM_021590059.2


Basic Information

Item Value
RNA id XM_021590059.2
length 1456
RNA type mRNA
GC content 0.47
exon number 9
gene id rpp40
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36002853 ~ 36013047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACAAGCAAGCACGCTGGCTCTCTAGCCGGAAGTAGTTTACAAGTTCAGAGAGGAAGATACTGTATTTCACATGTTTGATTCACAAGTGTGTGTATAGCTAAATGTCTTTGGTTTAAATGTGTTTAGATTTGTTGTTTTTGATACAAGTCTAATACAATGTACCCGGAGCTAGACAAGTGTCCAAGAAGTTTACTTGTTTGCGAGAAATCGAACTTTGAGCATGAAAAGTCTAGACACGACACTCACGTGTCAAAACATTATTTTAACCACAAGGTGTCGGTTGTAATACCGGGATGTGGTGCCCTTTCTTCCCGGCTGGCCACTGTCATAAACAATTTCAGCAAGTATTTTCTGGTGAATAATTTACCAGTCTATGAGTTTTTGGATAAAGACTTCTTGAAGAATGTTGTGTGGGATGgcgctctctatGCTCTTTCCTACAAGACAAGCATTGACCAGGATAACACCATTGCACTTCTCCCTAGCGGTCAGCTGATCCTCTCTGTGGATAAGGACACGTATGAACAGCTGGGTGTGGAGGGAAAGCCGTCACAGTACAATCACAGACAGCCCATGAGATATGTCGTGACCATTGACCTGACGGACAAATCCATGGCGCCGGAAGGGAAGCGCTACCAGCGAGTTCTCTCCAGCCTTAAAGAAAGGGTGCCTCTGAAAAGCGACTTCCTGCTAGGACGGCACAATTCGGAAACTCAAGGGGCGGATGGGGATAGAGCGCTGCAGAGTCTCCTGTCCCGTTACCAGTGGAAAGAGCACAGACCAGTGGTCAGTAGCCACACCCTGAAGGATCTGCCATGTCCATCCCTGAACGCTTTGGACCTGCGCGGGGACCAGCGGTCTTGTGACCCCCACAGCTTCCTGGAGTGGCTTGGAGCAGTGAGCGCTGGTGTCAGTTGTGACAATACAGCAGCCAGCTTCCTTTCAACATACGTCTGTCCAGAGCCCCAAACACTGGTGAGCCAAGCCCTGCATTGTACAGTGTCCGGCCTGCTGCTGCCCGAAGACATCTACTCTCTGCTGCAGGAACTGCAGCGGTTCTTTGACGAACCCAAAATCACGTCCTGGCTGTCACTGACTGTACACGGCTTCATGGACAGTCCCGTTTCCTGGGGAGATGCAGAACACGGGTTTCACAAGGGTGGTGAAAACTTCTACAACCTCGTCCTCTTCAAGAACCAGGACTACTGGTTGCACATGGGCACTGGCTCCCATGATAGATGTCCCCCATGATGACCACAaaacaaaagttttttttttgtttttttttcagcTTGGTTTTTTTAGGAAAATAAGGTATTGTGTACAAAACTGTTCACAAAATGTACTGCTTATCAATTGTGATGTTTCTAAAGAAATCTACTAATTTGCTCAGTCTTAATTTTTGTCTTTGCCATCTTCAATAAAAATAATTGAGTCCAACTGAAGTGCTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438834 lncRNA downstream 1180 36001304 ~ 36001673 (-) True G2132903
TU2438807 lncRNA downstream 3959 35996867 ~ 35998894 (-) True G2132876
TU2438770 lncRNA downstream 120732 35881833 ~ 35882121 (-) True G2132841
TU2438748 lncRNA downstream 131629 35865848 ~ 35871224 (-) False LOC110509091
TU2438742 lncRNA downstream 131744 35866481 ~ 35871109 (-) False LOC110509091
TU2438841 lncRNA upstream 5886 36018933 ~ 36019457 (-) True G2132910
TU2438842 lncRNA upstream 7091 36020138 ~ 36026003 (-) True G2132911
TU2438846 lncRNA upstream 10733 36023780 ~ 36025101 (-) False LOC118944844
TU2438845 lncRNA upstream 10743 36023790 ~ 36025101 (-) False LOC118944844
TU2438858 lncRNA upstream 23612 36036659 ~ 36037337 (-) True G2132917
XM_036966073.1 mRNA downstream 77070 35870156 ~ 35925783 (-) False LOC110509091
XM_036966685.1 mRNA downstream 160831 35833983 ~ 35842022 (-) True LOC110509089
XM_036966684.1 mRNA downstream 160862 35833983 ~ 35841991 (-) False LOC110509089
XM_021590050.2 mRNA downstream 189406 35782149 ~ 35813447 (-) False tfr1a
XM_021590049.2 mRNA downstream 189708 35782149 ~ 35813145 (-) False tfr1a
XM_036966844.1 mRNA upstream 3039 36016086 ~ 36017873 (-) False lyrm4
XM_036966480.1 mRNA upstream 10667 36023714 ~ 36025735 (-) False LOC118944844
XM_021590063.2 mRNA upstream 30994 36044041 ~ 36052174 (-) False LOC110509099
XR_005040236.1 mRNA upstream 30994 36044041 ~ 36052175 (-) False LOC110509099
XM_036966658.1 mRNA upstream 30994 36044041 ~ 36052176 (-) True LOC110509099
TU2437347 other downstream 1484724 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1484724 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1516677 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1944583 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1960288 34041569 ~ 34042565 (-) False LOC110509052
TU2438803 other upstream 3015 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 10733 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 10743 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 211166 36224213 ~ 36225379 (-) True G2132971
TU2438933 other upstream 222468 36235515 ~ 36249775 (-) False G2132966

Expression Profile