RNA id: XM_036966844.1



Basic Information


Item Value
RNA id XM_036966844.1
length 651
RNA type mRNA
GC content 0.42
exon number 3
gene id lyrm4
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36005489 ~ 36017873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAATGGggtttttgagaaggaggcgaagGAGTCAAGGAAACGCGATCATAGTGTTTACATGAACCAACATGGCGTCATGCAGCAGATCGCAGGTGATCTCCTTGTACAGGATGCTTATAAAAGAGAGCAAAAAATTCCCCTCTTACAATTACAGAACATATGCCCTGCGCAGGGTAAAGGATAGCTTCAGGGAGAATCTCCATGTTGACAACCCAAAAACTCTGGACATGCTGCTCAACCAGGCCAGAGAGAATCTTTCTGTCATCAAGAGACAGGTGTCCATTGGCCAGATGTACACTGCTCAGAGGACCATTGTGGAGGAAACTGGAGTGCACAGGGACCTCTGagtttgtagtagtggtggtggtggtggtgttgtgatTGTTGTTATCATAGGATGTCTTGGACCACATTTTGGACAGTTAAAGTCATGTTTTGCTATGGTAACAGCACTGAGGAAAGGCTTTAGTCCCAGAAAGCACTTACACCAGACAACATTTCTCTCTGATGTATTGAAATGTATGATCTCTTTTTAAAACTCTTTACTCATGTTATCATTTATATGTATTTGTAACAGCTTGTAAGTGATATGTAATACCCTTTTGTTGCAATGACTGCAGCATCTCAATTAAACAGTAATATGTGCAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438834 lncRNA downstream 14413 36001304 ~ 36001673 (-) True G2132903
TU2438807 lncRNA downstream 17192 35996867 ~ 35998894 (-) True G2132876
TU2438770 lncRNA downstream 133965 35881833 ~ 35882121 (-) True G2132841
TU2438758 lncRNA downstream 144977 35866481 ~ 35871109 (-) False LOC110509091
TU2438841 lncRNA upstream 1060 36018933 ~ 36019457 (-) True G2132910
TU2438842 lncRNA upstream 2265 36020138 ~ 36026003 (-) True G2132911
TU2438846 lncRNA upstream 5907 36023780 ~ 36025101 (-) False LOC118944844
TU2438845 lncRNA upstream 5917 36023790 ~ 36025101 (-) False LOC118944844
TU2438858 lncRNA upstream 18786 36036659 ~ 36037337 (-) True G2132917
XM_021590059.2 mRNA downstream 3039 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA downstream 3039 36002853 ~ 36013047 (-) True rpp40
XM_036966073.1 mRNA downstream 90303 35870156 ~ 35925783 (-) False LOC110509091
XM_036966685.1 mRNA downstream 174064 35833983 ~ 35842022 (-) True LOC110509089
XM_036966684.1 mRNA downstream 174095 35833983 ~ 35841991 (-) False LOC110509089
XM_036966480.1 mRNA upstream 5841 36023714 ~ 36025735 (-) False LOC118944844
XM_021590063.2 mRNA upstream 26168 36044041 ~ 36052174 (-) False LOC110509099
XR_005040236.1 mRNA upstream 26168 36044041 ~ 36052175 (-) False LOC110509099
XM_036966658.1 mRNA upstream 26168 36044041 ~ 36052176 (-) True LOC110509099
XM_021590064.2 mRNA upstream 35545 36053418 ~ 36064572 (-) True LOC110509100
TU2437347 other downstream 1497957 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1497957 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1529910 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1957816 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1973521 34041569 ~ 34042565 (-) False LOC110509052
TU2438849 other upstream 5907 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 5917 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 206340 36224213 ~ 36225379 (-) True G2132971
TU2438933 other upstream 217642 36235515 ~ 36249775 (-) False G2132966
TU2438943 other upstream 220357 36238230 ~ 36249775 (-) True G2132966

Expression Profile