RNA id: TU2438845



Basic Information


Item Value
RNA id TU2438845
length 291
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC118944844
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36023714 ~ 36025735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaggaagaagaggatgatgatgattGGGACTGGAATGAGACTGGGGACTTGACAAAACGCTACATGGCTAATAGAACAGGAATGAATCACCAGgCAAATAAACAAAATCTTAGTAACAAATCACAGAAACTGTCAACCCCAACTGACAAGGCTCTGAGGAAGTTTGAACACAAAATTAATTTAGATAAGCTCAACTATGCTGACTCTGTGATCAACAAAGTGACCGTGATGCAGAAACAACAAAATGCTGACACGTTTCGAGTGAAAGACAAATCTGATCGGGCTACAGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438841 lncRNA downstream 4333 36018933 ~ 36019457 (-) True G2132910
TU2438834 lncRNA downstream 22117 36001304 ~ 36001673 (-) True G2132903
TU2438807 lncRNA downstream 24896 35996867 ~ 35998894 (-) True G2132876
TU2438770 lncRNA downstream 141669 35881833 ~ 35882121 (-) True G2132841
TU2438763 lncRNA downstream 152681 35866481 ~ 35871109 (-) True LOC110509091
TU2438858 lncRNA upstream 11558 36036659 ~ 36037337 (-) True G2132917
TU2438864 lncRNA upstream 16433 36041534 ~ 36041826 (-) True G2132923
TU2438875 lncRNA upstream 52375 36077476 ~ 36077703 (-) True G2132934
TU2438969 lncRNA upstream 132127 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA upstream 132127 36157228 ~ 36157789 (-) True G2132992
XM_036966844.1 mRNA downstream 5917 36016086 ~ 36017873 (-) False lyrm4
XM_021590059.2 mRNA downstream 10743 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA downstream 10743 36002853 ~ 36013047 (-) True rpp40
XM_036966073.1 mRNA downstream 98007 35870156 ~ 35925783 (-) False LOC110509091
XM_036966685.1 mRNA downstream 181768 35833983 ~ 35842022 (-) True LOC110509089
XM_021590063.2 mRNA upstream 18940 36044041 ~ 36052174 (-) False LOC110509099
XR_005040236.1 mRNA upstream 18940 36044041 ~ 36052175 (-) False LOC110509099
XM_036966658.1 mRNA upstream 18940 36044041 ~ 36052176 (-) True LOC110509099
XM_021590064.2 mRNA upstream 28317 36053418 ~ 36064572 (-) True LOC110509100
XM_036966173.1 mRNA upstream 167668 36192769 ~ 36218674 (-) False fastk
TU2438804 other downstream 5958 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other downstream 5958 36016062 ~ 36017832 (-) True lyrm4
TU2437347 other downstream 1505661 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1505661 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1537614 34485869 ~ 34486176 (-) True G2131621
TU2438948 other upstream 199112 36224213 ~ 36225379 (-) True G2132971
TU2438933 other upstream 210414 36235515 ~ 36249775 (-) False G2132966
TU2438943 other upstream 213129 36238230 ~ 36249775 (-) True G2132966
TU2438987 other upstream 237901 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 531399 36556500 ~ 36557453 (-) True LOC110509111

Expression Profile