RNA id: TCONS_00057335


Basic Information

Item Value
RNA id TCONS_00057335
length 589
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id XLOC_028613
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13345672 ~ 13393170 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGTTTGCAGCCTATATAACTGCAATGTGCCTATATCAGGTATAGCCTATGTGAAGACTTGACAAAATAATGAGGATTTTCGTGGCTTCGGAAAGGTAGGAAAGGGAAAGTCTTGTTTGTGGTGGGTTGTAGTGGGCACCTTCACATTCGTGTGTCTGCTCACACCCCCAGCTCAGCTCCACAACGAGGCTGAGGGAGACACGGCGTTCAATTACACCGGCTGCCAGTGAATAGAAGGGACGAGGCGCGGGGAAATGCACGCCTGTACCGTCAGTGAAATGCGCCTGAGATTTAGCCCCTGAATGCACACGACGCCACCGAAATGCCGGGTTGGAAGAAAAATATCCCCGCTTGCCTGCAAGCCGACCAAGAAGGAGCTGGGTTGCTGGCACCTACTGAGGGAATACCAATACTCTGAATCAGCGGTGCCTTCCTCCTAAACGAAGATCCAAGTGAGCGAACAACATAAtggtctctccctctctctctcttcttgccatctgtttattttaaaagctTTCCTCCACTCATGCGAAATTGGAGTTTGCCTTATGGGGGAGGGGGAAGGACATCCCTGCTTCTTCAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055501 lncRNA downstream 188929 13138005 ~ 13156743 (-) False XLOC_028612
TCONS_00057333 lncRNA downstream 321504 13023507 ~ 13024168 (-) True XLOC_028611
TCONS_00058126 lncRNA downstream 355974 12988978 ~ 12989698 (-) True XLOC_028609
TCONS_00055494 lncRNA downstream 370197 12971922 ~ 12975475 (-) False XLOC_028608
TCONS_00055485 lncRNA downstream 462345 12873982 ~ 12883327 (-) False XLOC_028605
TCONS_00058127 lncRNA upstream 84059 13477229 ~ 13478821 (-) True XLOC_028614
TCONS_00057336 lncRNA upstream 96593 13489763 ~ 13490081 (-) True XLOC_028615
TCONS_00055513 lncRNA upstream 212437 13605607 ~ 13614821 (-) False XLOC_028623
TCONS_00055517 lncRNA upstream 232812 13625982 ~ 13626833 (-) True XLOC_028624
TCONS_00058128 lncRNA upstream 487366 13880536 ~ 13889277 (-) False XLOC_028626
TCONS_00055498 mRNA downstream 89859 13035870 ~ 13255813 (-) False XLOC_028612
TCONS_00055500 mRNA downstream 89972 13035935 ~ 13255700 (-) False XLOC_028612
TCONS_00055499 mRNA downstream 188701 13035935 ~ 13156971 (-) False XLOC_028612
TCONS_00055497 mRNA downstream 348085 12993913 ~ 12997587 (-) True XLOC_028610
TCONS_00055496 mRNA downstream 348324 12993913 ~ 12997348 (-) False XLOC_028610
TCONS_00055503 mRNA upstream 106094 13499264 ~ 13502549 (-) True XLOC_028616
TCONS_00055504 mRNA upstream 114414 13507584 ~ 13509946 (-) True XLOC_028617
TCONS_00055505 mRNA upstream 124276 13517446 ~ 13518381 (-) True XLOC_028618
TCONS_00055506 mRNA upstream 141884 13535054 ~ 13538714 (-) True XLOC_028619
TCONS_00055507 mRNA upstream 151425 13544595 ~ 13548806 (-) True XLOC_028620
TCONS_00055502 other downstream 89859 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055495 other downstream 366773 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055491 other downstream 431502 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 564537 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055465 other downstream 749868 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055510 other upstream 170497 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055533 other upstream 773872 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 783351 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 795357 14188527 ~ 14189659 (-) False XLOC_028638
TCONS_00055543 other upstream 797882 14191052 ~ 14191984 (-) True XLOC_028638

Expression Profile

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