RNA id: XM_036966205.1



Basic Information


Item Value
RNA id XM_036966205.1
length 802
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC118944824
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36230055 ~ 36232160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAAAATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAGACTGCCCTAAGGCCAGTAGTGATAGTGAACATAAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCTTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGATGACATCCGATATGACAAGTGTTCATCTCTAAAACTTGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTTGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGAACGGATGGTCAGAGGCCGTCCTTATAAAGCAGCCTTTTGGGAGCTTCGGTTGGGATTTTAAAAACAATGCAATTGTCTCAAATACTCTTTCCAATTTTGAATCCCTTATATTATCGTATTCCGCATAGATAAAATATTCTAAACGTACCCTTTGCTGATTCTCCACATATATTTAAAGAAAAATTGAGAACAGTCTGCTACTTAAGATTCGTATGGATTACCCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438946 lncRNA downstream 33086 36196849 ~ 36197432 (-) True G2132969
TU2438969 lncRNA downstream 72230 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA downstream 72729 36157228 ~ 36157789 (-) True G2132992
TU2438875 lncRNA downstream 152815 36077476 ~ 36077703 (-) True G2132934
TU2438864 lncRNA downstream 188692 36041534 ~ 36041826 (-) True G2132923
TU2438955 lncRNA upstream 2308 36234468 ~ 36243185 (-) True G2132978
TU2438985 lncRNA upstream 18216 36250376 ~ 36255942 (-) True G2133005
TU2438986 lncRNA upstream 25577 36257737 ~ 36258004 (-) True G2133006
TU2438989 lncRNA upstream 35084 36267244 ~ 36267598 (-) True G2133009
TU2439007 lncRNA upstream 80609 36312769 ~ 36313075 (-) True G2133027
XM_036966173.1 mRNA downstream 11844 36192769 ~ 36218674 (-) False fastk
XM_021590066.2 mRNA downstream 11844 36197798 ~ 36218674 (-) True fastk
XM_021590064.2 mRNA downstream 165946 36053418 ~ 36064572 (-) True LOC110509100
XM_036966658.1 mRNA downstream 178342 36044041 ~ 36052176 (-) True LOC110509099
XR_005040236.1 mRNA downstream 178343 36044041 ~ 36052175 (-) False LOC110509099
XM_036966202.1 mRNA upstream 3338 36235498 ~ 36240339 (-) False LOC118936612
XM_036966200.1 mRNA upstream 6487 36238647 ~ 36240335 (-) False LOC118936612
XR_005040206.1 mRNA upstream 6503 36238663 ~ 36240326 (-) False LOC118936612
XM_036966203.1 mRNA upstream 6503 36238663 ~ 36240336 (-) True LOC118936612
XM_021590068.2 mRNA upstream 11501 36243661 ~ 36245981 (-) True LOC110509104
TU2438948 other downstream 5139 36224213 ~ 36225379 (-) True G2132971
TU2438849 other downstream 205317 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other downstream 205317 36023790 ~ 36025201 (-) True LOC118944844
TU2438804 other downstream 212686 36005489 ~ 36017832 (-) False lyrm4
TU2438933 other upstream 3355 36235515 ~ 36249775 (-) False G2132966
TU2438943 other upstream 6070 36238230 ~ 36249775 (-) True G2132966
TU2438987 other upstream 30842 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 324340 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1534558 37766718 ~ 37939843 (-) True LOC110509127

Expression Profile