RNA id: XM_036966200.1



Basic Information


Item Value
RNA id XM_036966200.1
length 886
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC118936612
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36235498 ~ 36240339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATACCTATTAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAAAATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAGACTGCCCTAAGGCCAGTAGTGATAGTGAACATAAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCCTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGCAAGATGACATCCGATATGACAAGTGTTCATCTCTAAAACTTGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTTGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGAACGGATGGTCAGAGGCCGTCCTTATAAAGCAGCCTTTTGGGAGCTTCGGTTGGGATTTTAAAAACAATGCAATTGTCTCAAATACTCTTTCCAATTTTGAATCCCTTATATTATCGTATTCCGCATAGATAAAACATTCTAAACGTACCCTTCTTTGCTGATTCTCCACATATATTTAAAGAAAAATTGAGAACAGTCTGCTACTTAAGATTCGTATGGATTACCCCACAACTTATTTAAATGTTGTACGTTTACAAAATAAAATTACTGTTGAAAGTAAAGCTTACTCTAATTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438946 lncRNA downstream 41215 36196849 ~ 36197432 (-) True G2132969
TU2438969 lncRNA downstream 80359 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA downstream 80858 36157228 ~ 36157789 (-) True G2132992
TU2438875 lncRNA downstream 160944 36077476 ~ 36077703 (-) True G2132934
TU2438864 lncRNA downstream 196821 36041534 ~ 36041826 (-) True G2132923
TU2438985 lncRNA upstream 10041 36250376 ~ 36255942 (-) True G2133005
TU2438986 lncRNA upstream 17402 36257737 ~ 36258004 (-) True G2133006
TU2438989 lncRNA upstream 26909 36267244 ~ 36267598 (-) True G2133009
TU2439007 lncRNA upstream 72434 36312769 ~ 36313075 (-) True G2133027
TU2439030 lncRNA upstream 97973 36338308 ~ 36338554 (-) True G2133048
XM_036966204.1 mRNA downstream 6487 36230055 ~ 36232160 (-) False LOC118944824
XM_036966205.1 mRNA downstream 6487 36230518 ~ 36232160 (-) True LOC118944824
XM_036966173.1 mRNA downstream 19973 36192769 ~ 36218674 (-) False fastk
XM_021590066.2 mRNA downstream 19973 36197798 ~ 36218674 (-) True fastk
XM_021590064.2 mRNA downstream 174075 36053418 ~ 36064572 (-) True LOC110509100
XM_021590068.2 mRNA upstream 3326 36243661 ~ 36245981 (-) True LOC110509104
XM_036967106.1 mRNA upstream 98750 36339085 ~ 36391015 (-) False LOC110508243
XM_036967107.1 mRNA upstream 109062 36349397 ~ 36391023 (-) True LOC110508243
XM_036967108.1 mRNA upstream 150939 36391274 ~ 36398759 (-) False LOC118944889
XM_036966235.1 mRNA upstream 162234 36402569 ~ 36419771 (-) False faim2a
TU2438948 other downstream 13268 36224213 ~ 36225379 (-) True G2132971
TU2438849 other downstream 213446 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other downstream 213446 36023790 ~ 36025201 (-) True LOC118944844
TU2438804 other downstream 220815 36005489 ~ 36017832 (-) False lyrm4
TU2438987 other upstream 22667 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 316165 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1526383 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1887794 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2279236 38519571 ~ 38526920 (-) True G2135034

Expression Profile