RNA id: XM_021590068.2


Basic Information

Item Value
RNA id XM_021590068.2
length 1511
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC110509104
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36243661 ~ 36245981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTTGCTCCGCACTGGACCAAGATCCAATGAACTTGAGTGAAAGTCCTTGAACCAAAGTTAATGTTTGCTCTGCATGTACATTTATACCTATTAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAATATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAAACTGCCCTAAGGCCAGTAGTGATAGTGAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCTTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGCAAGATGATGTCCGATATGACAAGTGTTCATCTCTTCTTCATGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTCGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGAACGGATGGTCAGAGGCCGTCCTTTATAAAGCACTTCTGTCTTTGGATTTATAATGTAGCCTTTTGGGAGCTTCGGTTGGAATTGAACACAATGCAATTGTCTCAAAATTACTCTTCCCCAGTTTTGAATCTCTCGTAATACACAAATAAATATTGTAAAAACGTACCCTTCTTTTCTGATTCTCCACATATATTCAAAGAAATTGAGAGCAGTCTGCTACTTAAGATTCACATGGATTACCCCGCTGcttatttcaaaataatattaCTGTTGAAAGTAAAGCTTACTCTAACTTAACCAGTATGAGGGGTGAGAAATGAAATAAGGATGTTATTGGTTTCTTTTTTTCTGAATCTTAAAATTTGTTTTACAATTTTGGGAAGAAAATTGTCTGTATGTCTGCATATGTCTTGCAGTGTAAAATGATTGCAGCTCTGTTTCTACTTCTCTCAGGGCAGAGTGCCCACAGTCTtatctctgggcagccaggtctgCCTGTGACCGCAGATCACTACTAGATTTTTATAGGTAACATAATGAACTTAGGTCTGGTCCCTATGGCCAGGCTGTGTTCACGGAGTCTGCACATTGTCAATTCAGAATTTTCCTTAGTCACTGTGAACATATGTCTGTAGACCAAACAGCATTAAAGTTTGCTGTGGGTTTTGTCTTTCTAAAAggtgatattttttattttagattcGATGACGGTTTGGTTGGTTAACAACAACCGGAACTTGGCTTAGATTGTTGTCGGACTttaatcaaatattattttaaggggtggatcagctgTATTGCAGAAATAAATTCATtgcaaatcctacaatgtgattttctgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438955 lncRNA downstream 476 36234468 ~ 36243185 (-) True G2132978
TU2438946 lncRNA downstream 46229 36196849 ~ 36197432 (-) True G2132969
TU2438969 lncRNA downstream 85373 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA downstream 85872 36157228 ~ 36157789 (-) True G2132992
TU2438875 lncRNA downstream 165958 36077476 ~ 36077703 (-) True G2132934
TU2438985 lncRNA upstream 4395 36250376 ~ 36255942 (-) True G2133005
TU2438986 lncRNA upstream 11756 36257737 ~ 36258004 (-) True G2133006
TU2438989 lncRNA upstream 21263 36267244 ~ 36267598 (-) True G2133009
TU2439007 lncRNA upstream 66788 36312769 ~ 36313075 (-) True G2133027
TU2439030 lncRNA upstream 92327 36338308 ~ 36338554 (-) True G2133048
XM_036966202.1 mRNA downstream 3322 36235498 ~ 36240339 (-) False LOC118936612
XM_036966203.1 mRNA downstream 3325 36238663 ~ 36240336 (-) True LOC118936612
XM_036966200.1 mRNA downstream 3326 36238647 ~ 36240335 (-) False LOC118936612
XR_005040206.1 mRNA downstream 3335 36238663 ~ 36240326 (-) False LOC118936612
XM_036966204.1 mRNA downstream 11501 36230055 ~ 36232160 (-) False LOC118944824
XM_036967106.1 mRNA upstream 93104 36339085 ~ 36391015 (-) False LOC110508243
XM_036967107.1 mRNA upstream 103416 36349397 ~ 36391023 (-) True LOC110508243
XM_036967108.1 mRNA upstream 145293 36391274 ~ 36398759 (-) False LOC118944889
XM_036966235.1 mRNA upstream 156588 36402569 ~ 36419771 (-) False faim2a
XM_036966234.1 mRNA upstream 156588 36402569 ~ 36420014 (-) False faim2a
TU2438948 other downstream 18282 36224213 ~ 36225379 (-) True G2132971
TU2438849 other downstream 218460 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other downstream 218460 36023790 ~ 36025201 (-) True LOC118944844
TU2438804 other downstream 225829 36005489 ~ 36017832 (-) False lyrm4
TU2438987 other upstream 17021 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 310519 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1520737 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1882148 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2273590 38519571 ~ 38526920 (-) True G2135034

Expression Profile