RNA id: TU2439012


Basic Information

Item Value
RNA id TU2439012
length 4333
lncRNA type sense_over
GC content 0.38
exon number 1
gene id faim2a
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36400409 ~ 36420016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTTCAGCCCTTGCCAATCTCCAGAGTGTTGCTAACTCTGGGCCTGTGTAAGGGTTAGAACCAATCTAGGGGCTGGGGTCAATTTGAATTGAAGAtgggtcaattcagaaagtaaatttgaataataattttaaaccattttaaattACTTTTCAATAAACTGAGGAGTAGAAGCTATTTctagtgttttaaaaaaaatgtatttcctgaattgactgccttcaattaAAATTGACCACAGCCCTGTTGAATGTTAGATCTGCACCGAGGCAGTGTTGGAAGGTAAGCTGATCTCAGATCTGCCCTACGTCTCCCAATGTTACTCTTAGGACGTGACCAGGCAGTTGATGAATCACAATGAGACTGCAAAAGAATAAGCTGACAGTGTGCTGTTGGTGGACAATCCGTTTGCTGGGACAGATATGAGAACGGGTTAATTGCAACCACGTTTATTCAGGGTGACTTGTGGTTGACCAGTTAAATGGACACTGGCTGATTTCCCCTGGTAGTACTTAAACTTTTCTTGTCTTTGTTAtattggaatatatatatatattacagttgaCAAATCAGAGTCATTGCTTTTGTTTAAACAATTACTTTAAACAGTTTCAGTCACTGGTGAGTCCAAAAGTATTTCAAGATTACATTTATTCCCTTAAAATCACATTTATAGACATTGACTTAACCAAGCCGAAATTTGACCCCGATTTTGGCACATCTGGATTTTCTCATCTGGGTCTGTGAAACGTCATCAAGCCAATGAAGTTGAAGGATAAAAGTGACGCTTGCAGTCCTTGGTGCAATAATGTGTCTTTGGCTAGGTTGCGATTCTCTAGCCTCGTATTACCAAGCTGATTACTGCTGCGGAATCCGTGAAGCGAAACAGAATGTAAACTTGCGAGACTTCCGGATGGTTGTACGAGGTTACCGATTCTCTACCCTTCTGTTGTACAACCTTCTGGTGTTCGAGGTTACCCTTTTCCAGAATTTTGCACTCGTTCATCCCGCCTCATACAATTTAAAAGTATTGGATTGGTGCAACATAGCTGGAGGGTGTTTTCACCGTATTTCTGACACCAGTCCATCCTTTTAAATAAAGGGGGGTTGCACACTTTGGAAGAAGGTTAAAGAAAAATAATGTAGCTCTTGAGTGAGGAATGCTTTTTAGGGGGCAAGTTTCGTTTCTTTGTTACATTTAACTCACTTCCTCTTCTTTGAATTTACGTGCCCGTGTTACGAGGTTGTCAGGGCAGATTTCAAGTTATACTATGCCTTGGACTGAACTGGCAGGTTTTTTTTTGCTATCAAAGGTGTTTTTAAATAGAGTAGTCGTGTGTCTCTTCAAATATGTATGAACCGACCTCGGATGTAGAACTTGTATAGAGGCATGTTTTGAGGTTGTTTTAGTTCAATTGTGAAGTCAGAGATCTTCGGGAGGTGGGGTCAGTGTGACGTCAGTTGTCATTAGCTGACATTTGACATGTTATACATATGTCAGGGGTGTTCGACATAGGCTTAAACCGAGTTAGACACGCTTAGAACATTCCACTTTttaatatatttgttttattgttgttgcatttatTACCtagaattaaaaaaaacatttcctttTTTAGATGCCCTGTAGTACACCTTAATTATGGCAAAGGCTGGGCTCGTTCTGTTCGGCTGTATAGGTGCACTGTTTAGTGTGGTCTCTTTTTTTCACAATGAAACTGCCTAGTGCATACAATATAATTTGCACGAAGTGATCGCTATAGAATCTCCATAACATTTGTTAGCACTTTGTGTATTTTAAAAGCCAATTATTTTTGGTGAAAAGTGAAAATCTGGCACATTAACTTtgtaatactgaacaaaaatataaaccggTCCATTTCTACGAtttttactgatttacagttcaaataactaaatcagtcaattgtaataaataaattaggccctaatctatggatttcacatgactaggcacgggtgtagccatgggtgggcctgggagggcatagactcacccacttgggagccaggcccagccaatcagaaatgaGTTTTTTCCCCATaaaagggatttattacagacCGAAATAGCCCTCAATTTCATCAACTGTCCGGGCGGCtgatctcagacgatcccgctggtgaagaagccggatgtggaggtcctgggctggcgtggttacacgagGTCTGCGTTTGGCAGgccggttagacgtactgccaaattgtcttatggtagagaaattgacataacattttctgtcaacagctctggtgaacattactgcagtcagcatgccgattacacgctccctcaacttgagacatctgtggcattgtgttgtttgactAAACTGCACAtcttagagtgaccttttattgtccccagcacaaggtgcacctgtgtaatgattatgctgtttaatcagcttcttaatatgtcaggtggatggaatatcttAGCAAAGgaggaaatgctcactaacagggatgtaatcacatttgtgcacacaatttgagagaaataagctttttgtgtgtatggaaaatgtctggggatcttttatttcagctcatgaaacatgggaccaacactttacacgttgtgtttatatttcCGTTCAGTATAATTAAAGTTGGATCACACCTTAAATTAATTGCACGTCAAAAAGCCTGCCGGATCATTTGATAAAGCCTTCACGaacatggcacacatacacatacaggttTATAAATGATTTACGAACTTGtttaaaacgtgtgtgtgtgtgtaactgaaaCACTTCACAAGGTGTAATGCCACCTAATAGTAGTTTATGAATGATTCATAAAGCCTTCATGTCTTGTGACTGCAGACTTTTGGGTGATCCAAACTTGTAACATTCAGGTTTAAGCTTATTTTTTTAAGCAAACATTTCTGGGTGGTTGATACCGACAACAATAAAtccttgttttttttgttaatattGACAAAAtaagtaaagtttttttttttttttaacaatgtgtaaatactttcttaattATGTGAAATAGATATTTATGTGAGTAGTTAAAAGTAATTTATTATTTAGCCTACCCTTGTTAAAGAGGAGTTGTATTATCTTATCCTTGTTCACCAGCCAGTCTAGAGGACTGGTAAGCATGCCTTTTTAAAAACGTCATAGGTAAATGTTCAAGTACATGTCTAAGTACTACTCCTGTTCCTACTTATTCTTGTACATTACTTGGATTTTTTTTCCATAGATGTCACCAGATTGAGGAAACGGGTTTAAACCATTAATCAAGAGAATGGCGGTAGACTCTATGTATGAGTCaatgctcctgtaagttgctctgcatcggaagcatctgctaaatgactaaaatctaAATCTATATATTCTGTATGGTAATACCCGTTTTGACTCTTTTGATATCATTTTGAATTTGACTTAATTCACTCTGGGTCATAACTCTGATGGATCAATGCTGTTCTTACTACATTCCCCCTCTAAATCAGTATTATTTTACAAAGAAAATGAAAGACAATGTTTGACATTAGTGTAATGCACCAATACTCAATTAGAGTGGGCTGACATGAACCAACAGAACAATGTTGATACATTGTAAAATACTCAACATACTACAACTAGTGTTATTATTATGTCCACCAATAGTTAGATTCTATATGGTACATTTAACCTTTTCACCTTATATTACACTTAAATCATGCACATTTCTAGCCTACCTATTAAACTGCTCTCGCGTGCAAGGACGGATAATATTGTGGATTTTTCTGTTCCTGTTCATGGAACAAATCTTCTCAATGGTGTATGCTCCTCCCTTTTCTACTGTAACTAGAAAGATGGTTCGACCCACAATGTCTTCGGGATCATCATCTTCTATTAAAACTTAAGTGGTGTGATGtacttgatgtgtgtgtgtaatttggtCCCATATTTTGTTGCTTCTTGAGTTCGAACCCGAACTCTTGACTAGCCTGCATGCAGTGACAGTGGTTAAGTAGAGCATGACTCTCTTAAATACCGTAAGTTGAAACTAAACCATTTTGATGACAGCTCAATTAGTTTGGAAACCTTCCCTGTTTGTTGAAGTAAAATATGTTGTTTGAAAGATTTGTGTTGTGGGTTTTTTTCTTGCTCATgtccattatttttttttttaacgaacTATATCTTGAATTTTCTGTGGACCATTTATGCTAATTAGAATTTACATGGACACTTACACAATTTTAAAAGTTTGCATGGTACctgagcagctagctagctaaagttaaatTTGAATTAGCTTTATATAGCCAATATAGTAGCCTTTATAGG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439021 lncRNA downstream 1806 36393700 ~ 36398603 (-) True LOC118944889
TU2439034 lncRNA downstream 29256 36370544 ~ 36371153 (-) True G2133052
TU2439030 lncRNA downstream 61855 36338308 ~ 36338554 (-) True G2133048
TU2439007 lncRNA downstream 87334 36312769 ~ 36313075 (-) True G2133027
TU2438989 lncRNA downstream 132811 36267244 ~ 36267598 (-) True G2133009
TU2439039 lncRNA upstream 32504 36437245 ~ 36437444 (-) True G2133057
TU2439040 lncRNA upstream 32852 36437593 ~ 36437811 (-) True G2133058
TU2439022 lncRNA upstream 33767 36438508 ~ 36438901 (-) True G2133040
TU2439105 lncRNA upstream 170637 36575378 ~ 36578143 (-) True G2133115
TU2439124 lncRNA upstream 204391 36609132 ~ 36609348 (-) True G2133134
XM_036967108.1 mRNA downstream 1650 36391274 ~ 36398759 (-) False LOC118944889
XM_036967107.1 mRNA downstream 9386 36349397 ~ 36391023 (-) True LOC110508243
XM_036967106.1 mRNA downstream 9394 36339085 ~ 36391015 (-) False LOC110508243
XM_021590068.2 mRNA downstream 154428 36243661 ~ 36245981 (-) True LOC110509104
XM_036966203.1 mRNA downstream 160073 36238663 ~ 36240336 (-) True LOC118936612
XM_021590074.2 mRNA upstream 20213 36424954 ~ 36434911 (-) False abcf2a
XM_021590077.2 mRNA upstream 20213 36424954 ~ 36436314 (-) False abcf2a
XM_036966262.1 mRNA upstream 20213 36424954 ~ 36437017 (-) True abcf2a
XM_036966857.1 mRNA upstream 38482 36443223 ~ 36454287 (-) True LOC110508244
XM_036965930.1 mRNA upstream 122053 36526794 ~ 36557532 (-) False LOC110509111
TU2438987 other downstream 137079 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 150634 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 150634 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 175030 36224213 ~ 36225379 (-) True G2132971
TU2438850 other downstream 375208 36023790 ~ 36025201 (-) True LOC118944844
TU2439020 other upstream 151759 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1361977 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1723388 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2114830 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2600720 39005461 ~ 39006050 (-) True G2135837

Expression Profile