RNA id: XM_036966857.1


Basic Information

Item Value
RNA id XM_036966857.1
length 1654
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC110508244
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36443223 ~ 36454287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATAAGCCCCTCTGCTTTCCAGAAGCTCAGGCCACAATAAAGAGCCATGCGCCCAGGGACTACGGCTGTTTGACACGATCAGGCCATCGAACAGATTCTTAAGCCTCTCGACGATGTCCATGCAGGGTGACTAGCCTTCTTCTGACACCCACACACCTTGTTCTCTCCCATCTCATACCCGCATTGTCCAAGAACAAGAGGCCATGCCTCTGCCGAGACGTCGATCCTCCTTCCTGAACCAACCTGCTGCCAAGGAGCGCCCAGGTAGTGCCAACACCAGGGTTGGCACCGCAGGCATCACCAATGCCCCCCGGGGAGTCTTTGTGGGGACGGCCCCCACGGGCGTCACCTCCAGCATGGGCACGCGCGTGTCACGACGAGCCCTGGGCATCAGCAGTGTGTTCCTGCAGGGGCTGAGGAGCACGGCCGTGCCTGTGATGCCCCACGGGGTCGGGACCGGTGGCAGGCAGTACCCCGGGGGTGCCGAGAACCTCAACAGCTGCCTGATGGAGTACAGGGACAAGGTGCACGCCCTGGAGCAGCTCAACCAGCAGCTGGAGGAGCAGATCAAGCACTGCCTGGATCGTAAGGTGTCCAGCGCTGGAGCCTGGGGTCCCCTCAGACAAGACTGGGAGGATGTTTACAGACATGTTAGTGAGTCCATCCTTGCCAATGCCAGGCTAATGCTGCAGACAGAGAATGTGCAGGCCAACGCTGAGGACTTCAAGGACCGGTATGAGAATGAACAGCCGTTCAGGAAGGCGATGGAGGAAGAGATCAGCTCTCTGTACAAGGTGATTGACGACGCCAACCTGACGAAGTCGGACCTGGAGAGCCAGATGGACAGCATGAGGGCTGAGCTTCGGGACTTGGCCTGCAACCACGAGGAGGACGTGAGGGTGCTCTACAAGCAGATGGCAGGTGGCGAGATGGACGAGCTGGACGCTCCCATTGAGACCAATCTGGACCAGATACTGGCCTACATTCGCTCCCACTGGGAAAGAGTCATCGAGAAGAACCGTGCCGAGACCGACGCCTATCTGGAATGCAAGCAGGCGGAGAGTATGGGCAGTAAACTGAGCcgtgaggaggaggagctggagagTCTGAAGACAGAGTGTAATGATGCTGGCTGTAAGATCCAGAGTCTGCAGGCCCAAACTGAGTCTATCAGAGCACTGAAGCGAGGTCTGGAGAACTCCCTGAACGACGCCAGGCATTGGCACGACATCGAGCTGCAGAACCTGGGATCCGTCATCGGCAAGCTGGAGTCGGAGCTGGGTGACGTCCACGGCGACGTCGAACAACAGCGTCGCGACTATGAGACGTTGCTGGGAAACAAAATGCGTCTGGAGCTGGAAATCGGCACCTACCACGGCATCTTGGACGGGGAGGAGAGCCGCTACCACCCCTCCATGTGCACAGGTGCATCAGAGCCCGAGGGGAAACAAACTCCCCTTCCTCCCCATTCAGAGCCCTCTGGCAACCCAGCCCTCCAAGGCTCCAACACATCTAGTCCCTAGTGGAAGGACTTTGGGCCATTTGGGGAATAAAGCTCTCACACCGTTGTTCTCCAAGGTTTCTGTGCAAGGTATCATTTTGAAACCACGTTTTCACTACAGAGTTGAATAAAATCAAAACCTCTGCAAGAA

Function

GO: NA

KEGG:

id description
K10379 BFSP2; phakinin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439022 lncRNA downstream 4322 36438508 ~ 36438901 (-) True G2133040
TU2439040 lncRNA downstream 5412 36437593 ~ 36437811 (-) True G2133058
TU2439039 lncRNA downstream 5779 36437245 ~ 36437444 (-) True G2133057
TU2439012 lncRNA downstream 38482 36400409 ~ 36404741 (-) True faim2a
TU2439021 lncRNA downstream 44620 36393700 ~ 36398603 (-) True LOC118944889
TU2439105 lncRNA upstream 121091 36575378 ~ 36578143 (-) True G2133115
TU2439124 lncRNA upstream 154845 36609132 ~ 36609348 (-) True G2133134
TU2439125 lncRNA upstream 157289 36611576 ~ 36611832 (-) True G2133135
TU2439134 lncRNA upstream 168897 36623184 ~ 36623559 (-) True G2133144
TU2439140 lncRNA upstream 175290 36629577 ~ 36629803 (-) True G2133150
XM_036966262.1 mRNA downstream 6206 36424954 ~ 36437017 (-) True abcf2a
XM_021590077.2 mRNA downstream 6909 36424954 ~ 36436314 (-) False abcf2a
XM_021590074.2 mRNA downstream 8312 36424954 ~ 36434911 (-) False abcf2a
XM_036966236.1 mRNA downstream 23207 36402569 ~ 36420016 (-) False faim2a
XM_036966234.1 mRNA downstream 23209 36402569 ~ 36420014 (-) False faim2a
XM_036965930.1 mRNA upstream 72507 36526794 ~ 36557532 (-) False LOC110509111
XM_036965931.1 mRNA upstream 72507 36526794 ~ 36557532 (-) False LOC110509111
XR_005040178.1 mRNA upstream 72507 36526794 ~ 36557532 (-) False LOC110509111
XR_005040179.1 mRNA upstream 72507 36526794 ~ 36557532 (-) False LOC110509111
XR_005040180.1 mRNA upstream 72507 36526794 ~ 36557532 (-) False LOC110509111
TU2438987 other downstream 179893 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 193448 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 193448 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 217844 36224213 ~ 36225379 (-) True G2132971
TU2438850 other downstream 418022 36023790 ~ 36025201 (-) True LOC118944844
TU2439020 other upstream 102213 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1312431 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1673842 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2065284 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2551174 39005461 ~ 39006050 (-) True G2135837

Expression Profile