RNA id: XR_005040181.1


Basic Information

Item Value
RNA id XR_005040181.1
length 6271
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110509111
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36526794 ~ 36557532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTGAATGCCATCAACTTTTAGCTAATGCGAAACACGCTGAAACGGGCGCCTGGACGAGATTAATCGAATCCCCTCACTGAAAATGGCTGCCATTGACTTTATAACGTTAACTGGTGACAGCGAGAAAAAACAAGCgggagagaaagcagagagtgGCAATGAAGAGGAAAGCCAGGACctgtcagaggaggaaggaggcgCAGGGAAGGCAGAGGCCAGTTCGTCGACGCTCATGGTTGCCGCGACCTCAGCTAAGACCAAGAAAAAGAAACACAGGCACCGTAGCAAGAGACACAAGAGACACAAGCAGTCTTCACCTGAGGACAAGGAGCGATGCCACAAGCACCGGCACAAGCACAAAAAGCACAAGCGTAAAGACGGCCCCTTGACTGACGGCTTCCCCACCGGTGGCGACGACAACGCTTTCCCATACTCTTCCTCCGCCAAGCTGCCGAGACTGGAAGACGATGAGATGGCGCTTCTGGAGGAGCTGGAGAAACAGAGGGCCCTGATCCAAGCCGAGCTAGACAGTGAAATGACTGAGGGTGGCAGGGGGATACAGTCGGGCATGGCTCTCATACTCCAGGGATACCACTCTGGggtggaggaggatggggagattCAGGGGGAGAGGATGTGCAACGGGCAGCACTTCCGGAAAGGGGCAACGGGGCACGTGGCTGGCTCAGGCTCGCAGACTGCTAAAGACACCGGTAGAGTCCAGCGAGAGTCGACAGACGCCGGCAAAGCTAAGCAGAACAATCCCAATAAAAACGGCAGGAAGAGAAAGATGGACGGCAAGACCAAGGATCAGATGAGAGGACTGAGCACGTCCAGGGATAGAGACAACAGGAGACATTCCAGGAGTGCAGATTGCTTCAAGGAAAGGGCACAGGCGTCCAAGTCTCCTCCTGGCACTAGCAAGCAGCCTTCCCTGCCGGCTCAAAGCAGAGAGGCACAAAGCCAGGACAAACACAAGAAGGCGATCAAGTCCCCCGCCATGGACGCTTCCTCTGGGAATGAGAACTGCTCTCCTGGCCTACGAGGGAGGCCGCCAGGTCCTGCCTCCCAGCTGCAGCGCAGTAAGTCCCCATCACAGTGCCGGGACCTCCGGGCCTCCACCGGAGCCGAGCGAATAGCCAGGTCACCGCCACCACTCAGAGGGGGCCACCCGAGCCCcccagagagtcaaaggagagaggtggaccgaCTGAGACTATCACCTGGCAGGATTCGGAGCCAGGACGAAGCAGGGGGCCGTAGGGACGTCAGCGCAGCTCTAGGTGCCCGGCGACGGCTCAGCCGCTCACCATTCAGGCGGAGGTGTTGCTCTCCCAGGAGACGCAGCAGGTCTCCATTGAGGAGGAGGTCATTGGATCGGGACAGGATGGGACGGAGGCCGCAGTGGGGTTCCAGATCCCAGGAGGGGAGGCAGAGACTGAGCCGGGACAGAGAGGACAAGTTCAAGGGCAGCCTCTCGGAGGGAATGAAGGTCGACAAGGAGGACTCTGAAGATGAAGTGCTGGAAGATTACGATGTGGATGAGGACGACGAGGAGGCTCTCATCGAACAGCGGAGGCTACAGCGTCTGGCCATCGTCCAGAAGTACAAAGGAGGGAACGAGGACAGTAACATGTCGGAGCCCGGCAGCCCGCAGAGCAGCCAGCGCAGCCGCTCGCCCTCGCCGGACGACATCCTGGAGCGCGTGACGGCCGACGTCAAAGAGTACGAGCGGGAAAACGTGGACACCTTTGAAGAAAACATCAAGGCTAAGCACAACCTCATCGAACAGGAGAAAGATGAAGGAACCAACCCCAAAAAACCTTCCGCCCCCGACATGTTTACTGAATCGGATGACATGTTCGCCGCCTACTTTGACAGTGCAAGGTTTCGAGCAGCAGGTATCGGGAAGGACTTCAAGGAGAACCCCAACCTCCGAGACAACTGGACAGACGCAGAGGGATACTACCGACTCAATATCGGGGAGAAACTGGACAAACGGTACAGTGTGTACGGCTACACGGGGCAGGGCGTGTTCAGCAACGTCATCCGAGCCCGTGACGTGGCCCGCGCCAGCCAGGAGGTTGCTATTAAGATCATTCGGAACAACGAGCTCATGCAGAAGACTGGGCTCAAGGAGCTGGAGTTCCTGAAGAAACTCAACGATGCCGACCCTGACGACAAGTTCCACTGCCTGCGCCTCTTCCGACACTTCTACCACAAGCAGCACCTCTGCCTGGTCTTCGAGCCTCTCAGTATGAACCTGCGCGAGGTGCTGAAGAAGTATGGCAAAGACGTGGGCCTCCACATCAAGGCGGTGCGCTCCTACAGCCAGCAGCTCTTCCTGGCCCTGAAGCTGCTCAAACGCTGCAACATCCTTCACGCCGACATCAAACCTGACAATATCCTGGTGAACGAGTCGAAAACCATCCTCAAGCTCTGCGACTTTGGTTCAGCGTCGCACGTGGCAGAGAATGACATCACTCCCTACCTGGTTAGCCGGTTCTACAGGGCGCCGGAGATTATCATCGGGAAGCTTTACGACCACGGCATCGACATGTGGTCCGTTGGCTGCACTCTGTATGAGCTGTACACGGGCAAGATCCTTTTCCCAGGGAAAACCAACAACCACATGATTAAGCTCGCCATGGACCTCAAGGGCAAGATGCCCAACAAGATGATCAGGAAAGGCGTGTTCAAGGACCAGCACTTTGACCAGAACCTCAACTTCCTGTACACCGAAGTAGACAGAGTTACTGAAAGGGAGAAGGTGACAGTGATGAGCACCATCAACCCCACCAAGGAGCTGCTGGCTGACATGGTGGGCTGCCAGCGTCTGCCCGAGGACCAACGCAAGAAGGTGGCCCAGCTCAAGGACCTGCTGGACCAGACACTTATGCTGGACCCGGCCAAGAGGATCAGCATCAACCAGGCCCTGCAGCACCCCTACATCCAGGAGAAGATCTTCTGACCACTTCGTACTGTATCCACTCACAGTCATGCATTGATTGCTGCAACCAGTACTGAGTCCTTAGTTTGACTATGGTTGGACCCCCATCCCATCTGGCACTGCTGATGGAGAGGAAGTAGTATTATCTTTCTTCCCCtgtttgaaacacacacacacacacacacacacacacacacacactctctctcgttTTTCATCGATCTTCTGGATTGTATAAATAACCGTAGTAGGGCTCCAAGCAGAATGCCTGCTGCATAGCATATGTTCAGTTTCAGCCTACCTGCAAGTCAGATAGTTCTGTCTCATTATAAGCCCTCTATCTCATGGACAGTAAAGCCACTTGAGTTGGACTTTCATCCAATCAGATCTTCCATTTTTTGATTGGCCCCTTGCAGGTGACTGAAGGTGGATGATATTTTttgctgtaaaaaaaaagaaaaaagaaaagtgAATTCTGATTGGGTTAAGTAAAATGTTCATTCTGATTGGGTTAAGTAAAATGTTCATTCTGATTATTGGGGAGGGTTAGTCAAATGTTAATTCTGATTGTTGGGAAGGGTTTTTGAGTTAACGGTCATTCATGAGTTGCCAAGGCAGTGACAAGGCAGGGAGGGTAACCCAATACCCTTAACCTTTTGAATGGGATGTTTGTACAGTGGGTTGACTAAACTCCTGCAACCTTGGCAGCTCCTTTGACTTACTGTTACCTGTGATGTGGTGCAGGGCCAGCATAAATGATGTCTATATCCGCGTCTCCCCCAGGTATTGAAAGCCCCCATCCACCCTGTCCCCACATCCTGGTGTCTGTGCAGGCCCTGGTCCGCATGCCCGTTCTGCTGCTGCCTGTAGGTCTGTCAGTGCCGAAAACCCAAACGGTTGGGGGGGTCCTTGGGTTCTACTTGAGCACACCTGCAGGGATGGCCCCTCATGTTTAAAGCAGGTTGTATACCACTTGCAGTACATTGAAGGTAAGCTATCTTCCCCCCccctcctaaaaaaaaaaaaaaactaaactcaTCAACTTCAACTGATTATTAcctcatgttttatttttttgataTATTACACATGGTTTTAGCCAGATGTCCCTGTAGACATGGTTATGTCAAGAAAAATGGTTTCTATAAGACAACTATATATTTCTGAAGCATAATTCAAATCACTATGGCAAagattggataaaaaaaaaaatcaaaatcgGTCATGCATCTAAATTGTAGAGAGAAAATTGTGGGGGGGCGGGGGCTTTATCCAACAAGCTGTCACCTTCAGTGTACTTTTCTTAATGCAACAGCTTTATATTTTATTTGCTCTACTATGTAATgaataccttttttttttcttccctgcTCTCCCTTTATGGTGTTACGATGTTAGAAACTGTGAGGATAGCAGTCTTGCTATGTACACAAAAGCATGTGTTAATTGTTTCTAGGTGTgttctctaaaaaaaaaaaatgttgtataATAATAAGGCTATGTATGTGTTTTGTTTCCCTCTACTTTCTGTCATTggttttcatgttttgtgtgacCATGGTGTCTTTTGATACAGGGATATTCCTGCACTGAGCTTTGAGTCTGCTTGTTATGAGCGGTAATTGCCTCTACTTTATTtggtgttatatatatatatataatgatgaTCTTATAGGACCAAAACAGAAATAAAACAGCCTAAATGAGTAGCTAATGCAGTATGTATGCCTTTTCCATAAAATGTCTTCCCTACATACAAATGCCAATGTTCAGGCCCCATAAAGTGTCAACAATGAACTGAAATGCATTCTTTTTAAAGCTAATTCACCCAAACCTAAACTAAGAATACTTTGGTGTTCAGCGACTTTTTAGGCTGGAATCCAAACTTGAGATCTGTGCGCCAAAGCTTGACACGTACAGATCGAAAGTTTAGAATTCGGCCCTCACGTGCTAGATTTAGTTCAAACCAAAGGAGCAAGAAGAAGACAACATTTTGTGTGCTGTTTCACTGACGTTGATGTTTGTGCTGTTTTTCCCCCACAATGATGTTTCCTGTGGTGGCTGAGAGCGAGACAAGAGTCCAGCACTTCCTTCTCCAGGCCGGGCTCCCCTTTCAGAGAGACAAGACCTCCACAAGGCCACTTATCAAGGTCATTTCTGATGGCATGTGTAGATACTAAAAGCCGTAAAGCTATAGAAATAAATAGTCGTAAACTCGTATAACTCCCAGCGACTCTATTTAGTTGTATAGCTTCCAGTTAATTTGCCgatagtcagcacctctacactaaTGTTCCCTGGGGATGCTCCAGCTTGTTATTAGATACTAGAAGCCAACAACACTGGGTGGTGATGTAAAATACAATATGGCGACTTCATTTTGCTTACTGTTTTCCGGGAAGGCATTTGTCATAGACGCTCACCCACACTCGACCATTAAAAAGTTGTGGTTCCAAATGTTTCCTCTCACAAGTTGTTAAGGATTTATCGTTGTATTCGTCTACACATGACAGACACTTTTTGGTTAACAAAGTGTCATTACAAGCTGCACATGTACCCGAGTGTGTTTTGGTTACGCATATGGCTATAAACTGGTTCCAGATTGCCACAAGGCGTCCGGTAGCTTGACTTGTAACTGTCAAAGTTGAACCACCTGGCGTCAGGTAGCTTGACTTGTAACTGTCAAAGTTGAACCACCAGGCGTCAGGTAGCTTGACTTGTAACTGTCAAAGTTGAACCACCAGGCGTCAGGTAGCTTGACTTGTAACTGTCAAAGTTGAACCACCAGGCGTCCGGTAGCTTGACTTGTAACTGTCAAAGTTGAACCACCAGGCGTCAGGTAGCTTGACTTGTAACTGTCAAAGTTGAACCAAGATACTTGTTCATTTGTTCTCTATATGTTCTAGGTGCCGCCCTTTTAGAGAAGAGTCTCGCAAGGAACCTCCTCTGGACAAAGGTTTCTGTTCTGGAGAGAGTTACTGTATTTGTAAAGGGTAAGTCAGAACTTCTCTTCCCTGCTTTGGTTCCTTCAGTCTCCTCTTTCTGCTTTGGTGCCCATGTAAGACTGGAGACCAGGGGAAGATGTTCAACGAATGAGCCCCCGTGGATATTTCTCAAATAGAAAACGTTAAAACagaaatttatatttttttaatgttatgTAACACATTTGTCTACATCCTTCACTTTATTCAATGTAATCTTGTACACTACTGTTTCCTTATGATATAACATCAATGTGCATGCGCCGTCCTTAATTGAGAACATGTGTTCATTTTTCCATTTGGCATATTAATATAATAAACATAGGCACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439022 lncRNA downstream 87893 36438508 ~ 36438901 (-) True G2133040
TU2439040 lncRNA downstream 88983 36437593 ~ 36437811 (-) True G2133058
TU2439039 lncRNA downstream 89350 36437245 ~ 36437444 (-) True G2133057
TU2439012 lncRNA downstream 122053 36400409 ~ 36404741 (-) True faim2a
TU2439021 lncRNA downstream 128191 36393700 ~ 36398603 (-) True LOC118944889
TU2439105 lncRNA upstream 17846 36575378 ~ 36578143 (-) True G2133115
TU2439124 lncRNA upstream 51600 36609132 ~ 36609348 (-) True G2133134
TU2439125 lncRNA upstream 54044 36611576 ~ 36611832 (-) True G2133135
TU2439134 lncRNA upstream 65652 36623184 ~ 36623559 (-) True G2133144
TU2439140 lncRNA upstream 72045 36629577 ~ 36629803 (-) True G2133150
XM_036966857.1 mRNA downstream 72507 36443223 ~ 36454287 (-) True LOC110508244
XM_036966262.1 mRNA downstream 89777 36424954 ~ 36437017 (-) True abcf2a
XM_021590077.2 mRNA downstream 90480 36424954 ~ 36436314 (-) False abcf2a
XM_021590074.2 mRNA downstream 91883 36424954 ~ 36434911 (-) False abcf2a
XM_036966236.1 mRNA downstream 106778 36402569 ~ 36420016 (-) False faim2a
XM_036966569.1 mRNA upstream 240913 36798445 ~ 36958711 (-) False LOC110509116
XM_036966342.1 mRNA upstream 442991 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 757079 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 757079 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 757079 37314611 ~ 37333488 (-) False impa1
TU2438987 other downstream 263464 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 277019 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 277019 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 301415 36224213 ~ 36225379 (-) True G2132971
TU2438850 other downstream 501593 36023790 ~ 36025201 (-) True LOC118944844
TU2440638 other upstream 1209186 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1570597 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1962039 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2447929 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 3246263 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile