RNA id: trnas-cga-47


Basic Information

Item Value
RNA id trnas-cga-47
length 82
RNA type mRNA
GC content 0.59
exon number 1
gene id trnas-cga-47
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36683380 ~ 36683461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTGATGGCCgagaggttaaggcgttggatttgaaatccaatggggtctccccgcgcaggttcgaaccctgctcacagcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439139 lncRNA upstream 53511 36629580 ~ 36629869 (+) True G2133149
TU2439122 lncRNA upstream 76201 36606925 ~ 36607179 (+) True G2133132
TU2438596 lncRNA upstream 115020 36567326 ~ 36568360 (+) True G2132700
TU2438580 lncRNA upstream 141967 36540406 ~ 36541413 (+) True G2132684
TU2438571 lncRNA upstream 171935 36506589 ~ 36511445 (+) True G2132675
TU2439183 lncRNA downstream 3494 36686955 ~ 36687528 (+) True G2133191
TU2439191 lncRNA downstream 10856 36694317 ~ 36695004 (+) True G2133199
TU2439221 lncRNA downstream 38855 36722316 ~ 36722590 (+) True G2133229
TU2439223 lncRNA downstream 43656 36727117 ~ 36727418 (+) True G2133231
TU2439239 lncRNA downstream 76398 36759859 ~ 36760060 (+) True G2133247
trnas-uga-129 mRNA upstream 1507 36681792 ~ 36681873 (+) True trnas-uga-129
trnas-uga-128 mRNA upstream 2670 36680629 ~ 36680710 (+) True trnas-uga-128
trnas-cga-46 mRNA upstream 3677 36679622 ~ 36679703 (+) True trnas-cga-46
trnas-uga-127 mRNA upstream 5259 36678040 ~ 36678121 (+) True trnas-uga-127
trnas-uga-126 mRNA upstream 6847 36676452 ~ 36676533 (+) True trnas-uga-126
trnas-cga-48 mRNA downstream 1507 36684968 ~ 36685049 (+) True trnas-cga-48
trnas-cga-49 mRNA downstream 3101 36686562 ~ 36686643 (+) True trnas-cga-49
trnas-uga-130 mRNA downstream 4119 36687580 ~ 36687661 (+) True trnas-uga-130
trnas-cga-50 mRNA downstream 4278 36687739 ~ 36687820 (+) True trnas-cga-50
XM_036966341.1 mRNA downstream 293713 36977174 ~ 36982260 (+) True LOC118944833
TU2438557 other upstream 157965 36522754 ~ 36525415 (+) True LOC110509112
TU2438499 other upstream 313413 36365556 ~ 36369967 (+) True G2132611
TU2438402 other upstream 318386 36339094 ~ 36364994 (+) True G2132519
TU2438299 other upstream 708248 35973439 ~ 35975132 (+) True LOC110508289
TU2438124 other upstream 983145 35699846 ~ 35700235 (+) True G2132291
TU2439594 other downstream 355192 37038653 ~ 37038924 (+) True G2133551
TU2440527 other downstream 1285642 37969103 ~ 37969465 (+) True G2134356
TU2440611 other downstream 1439935 38123396 ~ 38143819 (+) True G2134434
TU2440932 other downstream 1842214 38525675 ~ 38526926 (+) True LOC110508247
TU2441508 other downstream 2106081 38789542 ~ 38985535 (+) True LOC118944840