RNA id: TCONS_00005243


Basic Information

Item Value
RNA id TCONS_00005243
length 1013
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_002827
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28370816 ~ 28380928 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCGAGCATGCGCACAAGACACAGTCACGTCACACACATAGTCGCGCGGGGGAGCTGGATTGGAAGTGGCTTGTGCGCGAGGCAGAAGGAGTTTTCCACATGTGGATGAAAAGAAAACACGAAGTTGGACCTGAATTTCAGCTCAACAGCTAACAATGAAGAAAGAAATTGCAGCGGTGGTGTTTTTCCTGAAGCGGTTGATAAAGAAAGCTGAGAAGTTAGATGCGGACAAGGTGGACCTGTTTGTGGAGCGGTTAACAGTAGCATTACAGGAGAAGTATAAAGGTCACTGGTATCCGGACAACCCCAGCAAAGGCCAGGCATTCAGGTGCATCAGAGTCAACCGCTTCCAGAAAGAAGATGCTGAGTTGCTGAGAGCTTGCGCTGAAAGTGGAGTGCAGTACAAAGACCTTGGCCTGCCTAAAGAGCTCACACTTTGGGTTGATCCTGGTGAGGTGTGCTGTAGGTATGGCGAGAAGAATCATGGTTTCACTGTGGCCACTTTCTCAAGCGAGGACGATGATGATAAAGAGGATGTGACAAAGAAAGTGACGAGCGCCGTGGAGCGGGTCACGTCGGATTACCACTCTGGATCCTCCTCAGATGAAGACATCAGCATGTTAGTTCATCGGTGTTAGTGTGAGGGGTGTTACgttgaaaagtgtttttttgaagTTACCACTAAGACGACTGACCAAATTTTTTAAGAAACGTATTTTTGTAGTTCTACTGTCACTGTTTTTTGAATTTGTGACTCGTCTGTTTTTTAAAGGAACGATAACTGTAACTGTTTGCACTTTAGAGTATTTGTAATAGAGCGTGTATTCGTACATATTGGATTAGGAGTATTTAGAGTATTTCAATTTTTATGGTAATGGAAAATTGTGCTGTATTTGTTATATGGGATcatttgataacactttacatcatgttttatttattcacagTAAACTATTATGTATTGCATAGACCACttaaattatgaataacattAAAAAGACGTTTTCAtgaa

Function

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031113-19 Predicted to be involved in negative regulation of cell population proliferation and negative regulation of mitotic cell cycle. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including immature eye; nervous system; pectoral fin bud; pectoral fin musculature; and segmental plate.

Ensembl:

ensembl_id ENSDART00000131220

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005242 lncRNA downstream 48992 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00005241 lncRNA downstream 52730 28317417 ~ 28318086 (-) False XLOC_002826
TCONS_00005769 lncRNA downstream 78827 28276683 ~ 28291989 (-) True XLOC_002823
TCONS_00005768 lncRNA downstream 93929 28261569 ~ 28276887 (-) False XLOC_002823
TCONS_00005767 lncRNA downstream 114710 28239051 ~ 28256106 (-) False XLOC_002823
TCONS_00006072 lncRNA upstream 1157 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA upstream 1157 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006073 lncRNA upstream 1157 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00005770 lncRNA upstream 36723 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006074 lncRNA upstream 79285 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005239 mRNA downstream 1903 28311031 ~ 28368913 (-) False XLOC_002826
TCONS_00005240 mRNA downstream 2121 28312213 ~ 28368695 (-) False XLOC_002826
TCONS_00005236 mRNA downstream 177174 28172344 ~ 28193642 (-) True XLOC_002822
TCONS_00005234 mRNA downstream 252781 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005233 mRNA downstream 252781 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005249 mRNA upstream 11498 28392426 ~ 28395620 (-) True XLOC_002829
TCONS_00005253 mRNA upstream 89379 28470307 ~ 28513861 (-) False XLOC_002835
TCONS_00005254 mRNA upstream 89379 28470307 ~ 28525611 (-) False XLOC_002835
TCONS_00005255 mRNA upstream 92581 28473509 ~ 28477023 (-) False XLOC_002835
TCONS_00005256 mRNA upstream 96464 28477392 ~ 28483672 (-) False XLOC_002835
TCONS_00005238 other downstream 77857 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005237 other downstream 171775 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005228 other downstream 956454 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1200744 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 1361692 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005250 other upstream 61812 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 66978 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 73572 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005262 other upstream 541207 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005263 other upstream 542589 28923517 ~ 28923633 (-) True XLOC_002838

Expression Profile

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