RNA id: XM_036966569.1


Basic Information

Item Value
RNA id XM_036966569.1
length 7217
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110509116
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36798445 ~ 36958711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTCTCAATGGAGATCATTGTAGCGACAACACGTAGTTGGAGCTAGGGAGCTGAGCAGCACAGTTATTGCAATCACGTTGAACGCGCCACTGTCTGTGGCAGTGGCATCGTCcggactgtgtgtgagagaggaagaCATCAAACGACAGTAGTGGTAAGGGAAGGTTTATAAGATGTTACAGCGCGGCTTTCTCAACACTTCAACTGTGGCAGTGCCTTTACAATGTGTTGGATTCTTTTTTGGAGCAATGGCTATGTGATTGCGGGTTCCTTTTGAGTGCGTTCCAGAGAGGAAAAGGCTCCAATTATCAACTGCAGGTGTGAAGTAGACGTGTTCTGACACCTTGGCAACCAGCAATCACAATCCATCCGTCTGTCTGCTGAAGGATACACTTGATCGTTAATCACCACCCGGAGTGTCTCTTCTGTTGAACCCCCTCCCCCCAGTTTATTCAGTGAATGGTGGACAAGGCTGGTGGATGGTGGACAACGCCGGTGGATGGTGGACAACACTTCTTCTTGAGTCTTTTCCAGTAAAATTTCAACAAACAAATTGTATCAAAAAAGATGCGACTGAACTGTCCCCCCATGTGGAGTGTGATTAGCGTGTTGACTGTGCTCGTACCCCTTTGGGAGAAGGGCTGCTCTGGCCTGACCTTGAACTCAGTGCCCCTGCATCAGGTCGGGATGTACCAAAGGAGCGGCGAAGGGGGGACACACCACAGGCAGAGGCGCAGCTGGGTGTGGAACCAGTTCTTTGTGCTGGAGGAGTACATGGGGGACGAGCCACTCTACGTGGGCAAGCTGCACTCGGACGTGGACAAGGGTGAAGGGCAGGTGAAGTACGTACTCAACGGAGAGGGAGCTACCTCCATCTTCACCATCGACGAGAACACGGGCGACATCCACGCCACCAAGCGTCTGGACCGCGAGGAGCAGCCTTACTACACGCTCCGGGCTCAGGCCAGGCACCGCCACACCAACCTGCCCGTGGAGCCAGAGTCTGAGTTCGTCATCAAGGTCCAGGATATTAACGACAATGAGCCAAAGTTCCTGGATGGACCCTACTCAGCCAGGGTCCCCGAGATGTCCCCAGTGGGCACATCTGTGGTGACGGTGGTGGCGACTGATGCGGACGACCCCACGtatggaaacagtgccagggtgGTCTACAGTATCCTTGAGGGCCAGCCCTACTTCTCCGTGGAACCAAGAACAGGCGTGGTCAGGACGGCTCTGCCCAACATGGACCGCGAGGCTAGGGAACAGTATCTGCTCGTCATCCAGGCCAAGGACATGGTGGGTCAGATGGGAGGACTCTCCGGGACCACCTCTGTCACGGTGACGCTCACTGACGTCAACGACAACCCACCACACTTCTCTCGCAAGAGCTATCAGTTCAGCGTGCCCGAGTCCCTGCCGGTGGCCACGACGGTAGCCAAGATAAAGGCACTAGACTCAGATGTGGGACCCAATGCTGAGATGGAATACAGGATCGTGGATGGGGACGGCCTGGGACTGTTCCGAATCACCCCCGACCCAGACACACAGGAGGGCCTCATCACTCTGCAAAAGGGCCTGGACTTTGAGACCAAGTCGAGCTACACCCTGCGTGTCGAGGCGTCCAATAGAAACATCGACCTGCGATTCCTGTCCCTGGGGCCGTTTAGCGACACAGCGACAGTGCGCCTCAACGTGCAGAACGTGGACGAGCCGCCCGTCTTCTCCTCGCCGTTCAGCAAGATGGTAATCTCGGAGGAGGCAACGGTAGGCACCACCATCGGGACCATCTTCGCACACGACCCAGACTCCACCAACAGTCCCATCAGATACTCTATAGACCGCAACACCGACTTGGAGCGTTTCTTCAACATAGACGCCACCACCGGTGTCATCAGCACCGCCAAGCCCCTGGACAGAGAGGTTAACGCCGTACACAACATCACCATCTTCGCCACGGAGATCCTGGACCCACTGCAAGTGGGAAAGGGTGTAGTTCTGATCACAGTGACGGACATCAATGACAACGCGCCTGTCTTCGCCATCGAGTATGAGACCTACCTTTGTGAGAGTGCCAGACCTGGACAGGTCATTGAGACCATCAGTGCTGTTGACCGAGACCAGCCTCAGAGTGGACACCGCTTCTTCTTCTCCCTAACCGCTGAGGCTGCTGGGAATCTCAACTTCACCCTGAGAGACAACAAAGaCAACACGGCTTCTGTGCTGACCAAGCGAGGGGGTTTCCAGCGCCGCCACCAGAACGTGTACCGTCTCCCCGTTCTCATCATGGACAATGGGAGCCCCGCCCTCAGCAGCACCAACACCCTGTCCATCCGGGTGTGCGACTGTGACCCTGATGGGATCCCCCAGTCGTGTGGGAGTGAGAACTCCATGCTCTCAGCGGGCCTCAGCACCGGGGCCCTCATTGCCATCCTGGCCTGCATCCTCACACTACTGGtgCTGGTCCTGTTGATCATCACCATGCAGCGACGGAGGAAGAAGGAGCCCTTGATCCTGGACGAGGAGCGTGATGTGCGCGAGAACATTGTGCGCTACGACGACGAGGGCGGCGGCGAGGAGGACACAGAGGCCTTTGACATGGTCGCTCTACGCAACCTCAACGTAGTCCGTGAGAGCGGCAGCAAGAACCGCCGTGACGTCACTCCAGAAGTGCCCACCCTCTTCTCGTCTTCCCGGCCACCGCCGGACAACGGCATCTTCCGCGAGTTCATCTGGGACCGGCTGAAGGAGGCCGACGTGGACCTGTCAGCACCACCCTACGACTCACTGCAGACGTACGCCTTCGAGGGCAGCGGCTCAGCCGCAGAGTCCCTCAGCTCGCTGGATTCGCTGAGCATGGACTCGGAGCAGAACTACGACTACCTCAGCGACTGGGGGCCACGCTTCAAGAAACTGGCAGACCTCTATGGCCACAGCGACGGCGGCAACCTCTTCGTCTCTTAGCCCTCGGTTGAGCCCCGCCGATATGAATAAGGATACAAGAAAGGACATTTTAGATGACGATAGGATGATGCTGTACTCTGAGAGGACATTTGATTGGTGTGGTATAAATGCATCAATGTGGGTTGAGAATTAACTGTAGGATGATGGTTTTCCATTCAAAATGCTTTGTTTTGGGCACTGCATACTGGCTGGATTTTTCAAAGGATGACATTTTGGAGATTTTGTTAGTAATGTTTTAACATGAAATGATGCAAAGCTTAAAACATTGGGATGGCCTCCAGACCCGTTGGAAGGACCTCAACGCACAAATGTCCAGACATTCTCATGTCACAGTGACGTTCAAACGGAACAAGGAGTGAACCGATATCTACGCTTCAGTGGTGATACAACAGTGACATTTTCAAGTACAACATCTTGTCATGGTGAAATGAGTAGCCTGACCTCTTCAACTGGCCCTGTAGTCTGTCCCAGGGTTCACTATGATCTGTAACATTTGTTTCAAACTGATATTTAGGGGTTCACAGCTTTGCTGTAAAACCTATTGTTATTCTTATATTATAATGTTTTCCTTGACATGGTAAAATAACTCAAGCATAGGTTGATAACTTTTGTTTGAATTCGGCACACAAAAACTAGAGGCCATGAGTAACTTGGTCTAAAAGAATGGTACTGATTGACCTATAGGTGGCGTTGTAATACGCAGTCTCATTTAAACCCTCATATCTGCTGCCCAGTATGACCTACAGACTTTAAACTTTGTATGTAGGTGTCTTTCCTCATACTGAACAAATTTACCTCAAGGACCCATAAGGCCAGCCAGGATAGATTTTCCTACATCTTGGACATTTTGGAAAACCTTTGATAAAAATAACATAAATAAGGGATTGGTTAACAGGGCTGAGTAATTATTAAATCTAGAAATCATATTTACGTGTCAATTTAAATCCTTTGTATATCCATTTCACAATGTCCTATCAATTTGCAACTTCTTAGGGTCATCAAAGACATTACCACGATGAACCATGTTAAGTTTGGCATTGATATCGTAAAGGCCGAATTTAGCCGTTTTTATATCAATGTCAAATCATTTCTTCTCAACAATTaaataccttactgtaatagttttCCATTGAAATGGACAATAGTTTTTAGCAAATAACTATTTCTAAAGCAAGACCCCATGGTGTATGTGGGGATGGGAAAACtcaaaactagctgttattggcagggaggtttggaactctttgttattggtctattaaccaatttaccgcctggtgatgtcaccaggtggtaaattgaACTCCCACCCATGCAAACCTTCTGATTAGAACATTcagtgtagattgtattttcaaaacATGGCAGAgttattgacacttttttttataCTACAAATCTATTCCACAGTGGCCTGTGAAACTATTATTGACATCCCTAAAATGAACCACACTTAATTATTATTAACAACTCATTATTTTCATATGTAACGCTCATGCTCAAAACCACATTGTCCTCATAAAAACATACGTCACTTTCACTCCATATTTTGATTGCACTTAAAGGAAGATGCTTCCAACATGATAGAGTGCTTTGTTATTCAATTGATCTTGTGTCCTTTGTCATCCTGTGAACCCTGTTCATTGCTGCTGGCAGGCAGTTATATTCATGGAAGAGATTCTCAAAACAGGATAAATCCTTATGGATTTTACAGCAGGGTTTCATCAATGGTGGATTTGATCAATTCAGGCTTACTCTGGTCCATATTCAGTAGAGCTCACCGTAGCAACATTTTTTGAAACAGAAAACAGAAATGGGTGTTTCTTATTCGACCGGTAGTCCAGtagtctctctcccttttcttccatttggtggcTACCGAACACGGTCACGATCTACAATCCTATAACGGTATCTAGACACCTGTCCGATTTGTCCGCTCTCACGCTCACATTCCGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAGGTTCTGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAGGTTCTGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAACGGTGTAGCAGGGAAGGTGAGATAAGGCAAAGAGACTGGGGTTGGGGGGTAGCGATGAAGAAAACACTATCATGTCACAGCCTGGAAGCCTTGTAAACATCTGCAGTGATTGCACCATATCGGTAAGTTAAAAATGTAAAGCTGTTGTGATTGTTTTATCTATCCTATGAGGTGTTCTAGCAACCATGATGGTTaaatttgttgtttttttagttGTTTTTTACGGAAACATAGCTGTAACAGCATTGGAAAATACAGTTAGTGTTGGGAAACGATTTACAGCAAAGCTGTGGGCACTTGTAAAAATACTAAGCCAAGGAGAATGTCAACTGTTATTTTGCATGCAGTGAGTAGAAATCCAGGATGGAAAAATCAAGGCAAAAAACAGCTGGGAAACAAAACAAATCTAGTTTTTGGTTAAGAGCTCTGATGAGGCCTTATACATTTGATGCTCATTAGTTGGAGAAAACATTACACCCTAAATGGAACCAACACAGTTCTGCATATCCTTTTTCCCACTATCGTGCTGACCCAAACCGTACAATGTTGGCAATATATTTTTTCTCATTGTCCCATTACAACAGTTTCATCAACTATGGATGtgcaacgccccccccccccccccccccccccattgcgtATAGTTCAACAGTACAGTAAAATGTCACTTAAATCCAACAAGTACATTGAAGTACAATGCAGTACAAATGCTTTTATCGAGAGCAACAACATAAGCACCTGTTAAGACCCCCTTATAATATCTTCAGTTTAATTTTCAGCTCATACCAATCTTGATTTATTATCAGCTATTTTGAGGCTGTTGAAAAAATGTATGCCTACAAATGTCTAAAGTTGATTACAAACGTATAATATACATTTTATTATATTATTCTTTACTATAATAAATCGTTATACTGTTGGCTGGAAGTGTTACCAGAAATGAGGAAGACGTGGTCATACTTCTTTAAACAGCCATCCACAGTACAGTATTTGAGTtacataaaaacaaaaaaaatgattttcaGTTAGAAAAACACATTTAATAAATACCTTTCGAGGttttcaatgattacattttagCTAATCTCTACCACAACTGATAATTAAGTCATTCTGCTTCCaaagtgatgatgatgaagattgAGGTTATTTTCTTTAGTGATGGCTGTCATCGTTAAGGAAACACAATTATTTGTTAACTGTCTTGCTAAATGGAATTTTAAAGAGATGTCGAAATCTCGTCAGGCCTGGCTCAAAGTTTTAATAAATATACATTTAATTAAGCAGATTGCCAGAGATCATCTGCACTTGGATGAGACACTAGGGGAGAGGCTTCGCTTTACCACACAAATTAGTGTATACaaaaagatatatacacaaaTTAGTGTATACAAAAAGAGATATACACAAATTAGtgtatacaaaaatatatatacacaaattAGAACTATTGTCAATAATATTATGAGTTTGTTCTATATTTCTGTGGCGTAGAAAGTTGGATTTTATCCATGAAGCATTTCGTTTGCACACATTCTTAAATGGACTCAGTTGTTGTTCTTGTTTCGGTATTAGAATACTGCAAACCCTTAAGGTTTGCCACGAAATATTGATGTcataattcattttttaaaagaaCTTGAGAATTTAGGAGTACCTGCACTTCTCATTAATTGGGAtatttatttttcctattttacATTATGGAAACAACTTCATGATTATTTGgttgatgtttttttggggggcggGGTTTGTTACGAAAGCATTGTATGTACGCACGGCTTGTTTTCACTCGGATCTAAGGAATATGACACCTGGTGAATGTCAAAGTGGCCTTGCCTGTTTAGGAAAAGAGAAAAGGGACAACTGGTGTCAAGTGGCTGATAAGGTGTTCACATGAGGACATCCTCAGTCTCAGCAGGACTTGTGTCCGTCTCACCGTAGACTGACGACATTCTGAACCCCAACACAACTCAACACTACTCAGCAGACAATCACTGCTCTGTTTTTTTCTTCCCTCAGCCCAGCCAGTCTTGTGTATTTGTGCATAGAGAGAGGAAACTGAAActcacatttttttttgttgtaaaggAACTGTAAAGGAAATGCCGACAATGGCTCTTGACTGTAAGTCACCTGTTCAACTTTCAATAAAGTCCTAAATATGGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439406 lncRNA downstream 1084 36796424 ~ 36797361 (-) True G2133391
TU2439402 lncRNA downstream 10021 36788193 ~ 36788424 (-) True G2133387
TU2439399 lncRNA downstream 13864 36784377 ~ 36784581 (-) True G2133384
TU2439384 lncRNA downstream 55429 36742499 ~ 36743016 (-) True G2133370
TU2439382 lncRNA downstream 56874 36741227 ~ 36741571 (-) True G2133368
TU2439520 lncRNA upstream 5308 36964019 ~ 36964231 (-) True G2133481
TU2439522 lncRNA upstream 6476 36965187 ~ 36965469 (-) True G2133483
TU2439572 lncRNA upstream 61177 37019888 ~ 37020521 (-) True G2133531
TU2439585 lncRNA upstream 72942 37031653 ~ 37031856 (-) True G2133542
TU2439597 lncRNA upstream 81906 37040617 ~ 37040853 (-) True G2133554
XM_036965930.1 mRNA downstream 240913 36526794 ~ 36557532 (-) False LOC110509111
XM_036965931.1 mRNA downstream 240913 36526794 ~ 36557532 (-) False LOC110509111
XR_005040178.1 mRNA downstream 240913 36526794 ~ 36557532 (-) False LOC110509111
XR_005040179.1 mRNA downstream 240913 36526794 ~ 36557532 (-) False LOC110509111
XR_005040180.1 mRNA downstream 240913 36526794 ~ 36557532 (-) False LOC110509111
XM_036966342.1 mRNA upstream 41812 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 355900 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 355900 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 355900 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 355906 37314617 ~ 37323052 (-) True impa1
TU2439020 other downstream 240992 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 535115 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 548670 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 548670 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 573066 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 808007 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1169418 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1560860 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2046750 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2845084 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile