RNA id: TU2439370


Basic Information

Item Value
RNA id TU2439370
length 1534
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC110509116
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36798445 ~ 36958711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTATATCAATGTCAAATCATTTCTTCTCAACAATTaaataccttactgtaatagttttCCATTGAAATGGACAATAGTTTTTAGCAAATAACTATTTCTAAAGCAAGACCCCATGGTGTATGTGGGGATGGGAAAACtcaaaactagctgttattggcagggaggtttggaactctttgttattggtctattaaccaatttaccgcctggtgatgtcaccaggtggtaaattgaACTCCCACCCATGCAAACCTTCTGATTAGAACATTcagtgtagattgtattttcaaaacATGGCAGAgttattgacacttttttttataCTACAAATCTATTCCACAGTGGCCTGTGAAACTATTATTGACATCCCTAAAATGAACCACACTTAATTATTATTAACAACTCATTATTTTCATATGTAACGCTCATGCTCAAAACCACATTGTCCTCATAAAAACATACGTCACTTTCACTCCATATTTTGATTGCACTTAAAGGAAGATGCTTCCAACATGATAGAGTGCTTTGTTATTCAATTGATCTTGTGTCCTTTGTCATCCTGTGAACCCTGTTCATTGCTGCTGGCAGGCAGTTATATTCATGGAAGAGATTCTCAAAACAGGATAAATCCTTATGGATTTTACAGCAGGGTTTCATCAATGGTGGATTTGATCAATTCAGGCTTACTCTGGTCCATATTCAGTAGAGCTCACCGTAGCAACATTTTTTGAAACAGAAAACAGAAATGGGTGTTTCTTATTCGACCGGTAGTCCAGtagtctctctcccttttcttccatttggtggcTACCGAACACGGTCACGATCTACAATCCTATAACGGTATCTAGACACCTGTCCGATTTGTCCGCTCTCACGCTCACATTCCGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAGGTTCTGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAACGGTGTAGCAGGGAAGGTGAGATAAGGCAAAGAGACTGGGGTTGGGGGGTAGCGATGAAGAAAACACTATCATGTCACAGCCTGGAAGCCTTGTAAACATCTGCAGTGATTGCACCATATCGGTAAGTTAAAAATGTAAAGCTGTTGTGATTGTTTTATCTATCCTATGAGGTGTTCTAGCAACCATGATGGTTaaatttgttgtttttttagttGTTTTTTACGGAAACATAGCTGTAACAGCATTGGAAAATACAGTTAGTGTTGGGAAACGATTTACAGCAAAGCTGTGGGCACTTGTAAAAATACTAAGCCAAGGAGAATGTCAACTGTTATTTTGCATGCAGTGAGTAGAAATCCAGGATGGAAAAATCAAGGCAAAAAACAGCTGGGAAACAAAACAAATCTAGTTTTTGGTTAAGAGCTCTGATGAGGCCTTATACATTTGATGCTCATTAGTTGGAGAAAACATTACACCCTAAATGGAACCAACACAGTTCTGCATATCCTTTTTCCCACTATCGTGCTGACCCAAACCGTACAATGTTGGCAATATATTTTTTCT

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439371 lncRNA downstream 475 36798459 ~ 36799581 (-) False LOC110509116
TU2439406 lncRNA downstream 2695 36796424 ~ 36797361 (-) True G2133391
TU2439402 lncRNA downstream 11632 36788193 ~ 36788424 (-) True G2133387
TU2439399 lncRNA downstream 15475 36784377 ~ 36784581 (-) True G2133384
TU2439384 lncRNA downstream 57040 36742499 ~ 36743016 (-) True G2133370
TU2439414 lncRNA upstream 10198 36811828 ~ 36812038 (-) True G2133399
TU2439416 lncRNA upstream 11949 36813579 ~ 36813826 (-) True G2133401
TU2439420 lncRNA upstream 14994 36816624 ~ 36816826 (-) True G2133405
TU2439423 lncRNA upstream 16372 36818002 ~ 36819781 (-) False G2133406
TU2439421 lncRNA upstream 17869 36819499 ~ 36819983 (-) True G2133406
XR_005040180.1 mRNA downstream 242524 36526794 ~ 36557532 (-) False LOC110509111
XM_036966342.1 mRNA upstream 198893 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 512981 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 512981 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 512981 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 512987 37314617 ~ 37323052 (-) True impa1
TU2439020 other downstream 242603 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 536726 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 550281 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 550281 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 574677 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 965088 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1326499 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1717941 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2203831 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 3002165 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile