RNA id: XM_036965878.1


Basic Information

Item Value
RNA id XM_036965878.1
length 1497
RNA type mRNA
GC content 0.43
exon number 9
gene id impa1
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37314611 ~ 37333488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGTTGTTCCCAGAAAACTTCCTGTGCGAATGTAAACCAACAGCTAAAGAACGTCTAAAAAAGAGCTACCTGCTAGAATTAGGCTAGTAATATGAGGACATTAAGGGCCATGTAGAGAGTAAAAAGCTTTGGACAATCATGTTCGCTGGTGGGGTGTTCCCGATTGACAGAAATTAAAAGTGTATAGATTTTCCCAAAGGATCAGCACAACGAGATGCATGGATACTTGCTGTAAAACGAGGTGGTTGGACGCCAGCGTCAAAAATACAAATGGGTATTTAGCGCAAACTTCATTATTGCATCCTTTTAAGGACATAGTTCTTACATCAAGGCACCATACCATGACTGACCTTTGGCAGAATGCCATGGACCATGCTGTGGCTCTGGCCAGGAAAGCAGGCTCGCTTGTAAGGGATGCAGTACAGAATGACATGAAGGTTATGTTGAAGAGTTCTTCTGTGGACCTGGTGACTAAAACTGACCAAAAGGTGGAGCAACTCATTATAGACTCTGTGAAGGAGAAATTCCCCACGCACAGTTTCATAGGCGAGGAGTCGGTGGCTGCTGGAGAGCCCTGTGTTCTAACTGACAACCCAACCTGGATTGTCGACCCGGTAGACGGAACCACTAACTTTGTCCACGGATATCCATTTGTTGCCGTGTCTATTGGCTTTGCAGTCGACAGAAAGCTGGAGTTTGGAGTGGTGTACAGCTGCATAGAAGACAAGATGTACACAGCCAGGAAAGGGAAGGGGGCCTTCTGCAATGGACAGATCCTTAATGTGTCAGACCAGAAAGAAATCAGCCAGTCTATCATTGCTACTGAGTTTGGTTCcaacagagacacagaggtgGTTGACAAAATCTTCTCCAGCATGAGGAAGATCCTGTGTTTACCCATCCACGGGATTCGAGGTGTGGGCACAGCGGCCACAAACATGTGTCTGGTGGCGTCGGGCTGCGTGGAGGCCTACTACGAGATAGGGATTCACTGCTGGGACATCGCTGCCGGGGCCATCATAGTCACAGAGGCAGGGGGCGTCCTCATGGATGTAGATGGTGGACCATTGGATCTCATGTCCAGAAGGGTTGTTGCTGCAAATAACAAGATAATCGCTGAGAGGATTGTCAAAGAGATTGACGCGTTTACCCCTCTGCGAGATGATGCGTCTACAGAGACAGAAGACTGAACAAAGAAAAATTGCTATGTTTTAAGTCATATTCTTAGGGATAAAAAAATTGTGTTTTGTAagcttgttttatttttttttcccaAAAGATATCACTGTTCTTGAACAATTCTGGtcatttaaaaccaaactttTTTGTCCTAGCATTTTGTGTTTTATACGTTTTTAATTAGTTTTGAAATATTATAATTGTTTTATGTCAACTGACCAAGGAAGATCATTTATGTTTTAAGACATAGATCAGTACTGTATATGTGTCTCCAGTCatgtatgtaaaaaaataaatattttattttattgagttTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439869 lncRNA downstream 18097 37296314 ~ 37296514 (-) True G2133806
TU2439856 lncRNA downstream 21862 37258855 ~ 37292749 (-) True G2133793
TU2439825 lncRNA downstream 59489 37220524 ~ 37255122 (-) True G2133765
TU2439826 lncRNA downstream 90861 37223227 ~ 37223750 (-) True G2133766
TU2439711 lncRNA downstream 185668 37127428 ~ 37128943 (-) True G2133664
TU2440051 lncRNA upstream 53547 37387035 ~ 37388318 (-) True G2133972
TU2440058 lncRNA upstream 63953 37397441 ~ 37398302 (-) True G2133978
TU2440060 lncRNA upstream 66859 37400347 ~ 37402768 (-) True G2133980
TU2440139 lncRNA upstream 190307 37523795 ~ 37524007 (-) True G2134047
TU2440262 lncRNA upstream 240572 37574060 ~ 37665953 (-) True G2134142
XM_036966342.1 mRNA downstream 313464 37000523 ~ 37001147 (-) True LOC118944834
XM_036966569.1 mRNA downstream 355900 36798445 ~ 36958711 (-) False LOC110509116
XR_005040182.1 mRNA downstream 757079 36526794 ~ 36557532 (-) False LOC110509111
XM_021590087.2 mRNA upstream 4037 37337525 ~ 37425195 (-) False fbxl7
XM_036966595.1 mRNA upstream 4037 37337525 ~ 37470844 (-) True fbxl7
XM_021590091.2 mRNA upstream 137968 37471456 ~ 37473548 (-) True LOC110509120
XM_021590092.2 mRNA upstream 213324 37546812 ~ 37561210 (-) True inhbab
XM_036966375.1 mRNA upstream 245220 37578708 ~ 37604880 (-) False LOC110509123
TU2439020 other downstream 757158 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 1051281 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 1064836 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 1064836 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 1089232 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 433230 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 794641 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1186083 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 1671973 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2470307 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile