RNA id: XM_036966597.1


Basic Information

Item Value
RNA id XM_036966597.1
length 3847
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110509119
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37447739 ~ 37470801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGAATGATTTTAGTGATGTTCACAAACCATAGCCACACCCCTCGCCTACAGTCATTTATTCCACGAAAAACACCTGTCTGCGTAGGAGCAAaggattattatttattttttagaagCAATTTGGAAGAAATACCCGAATGATCATAGTCAATAAGGGACTGTTGGACCTTAATGCTGAGACATTACCACCCTCTCCCGATTCCCTGACTTTCAAACCAACCTTTTGCCTCGGTtccgtctcccctctccccctcctcctcctcctcctctccctctcttctttcccctccctgtgagtgagtctgtgtgtgagcAGTCATGACGACCAACAAGCCCAAGGGGCAGAACTCTCTGGCCCTCCACAAGGTGATCATGGTGGGGAGCGGAGGAGTGGGCAAGTCGGCCCTCACCCTACAGTTCATGTATGACGAGTTTGTGGAGGACTACGAGCCCACCAAGGCGGACAGCTACAGGAAGAAGGTGGTATTGGACGGAGAGGAGGTGCAGATCGACATCTTGGACACAGCGGGCCAGGAGGACTATGCCGCCATCCGAGACAACTACTTCCGCAGCGGTGAGGGCTTCCTCTGCGTCTTCTCCATCACCGAGGCCGAGTCGTTCGCCGCCACCGTTGACTTCAGAGAACAAATCCTGCGAGTGAAGGAGGATGAGAATGTTCCCTTCCTCCTGGTGGGTAATAAGTCAGACCTGGAGGAGCGGAGGCAGGTGAGCGGCGAGGAGGCCAAGGCCCGGGCCGAGCAGTGGGGCGTCAGCTACGTGGAGACCTCCGCCAAGACCCGTGCAAATGTTGACAAGGTATTTTTTGACCTGATGCGTGAGATCAGAGCCAGAAAAATGGAGGATGGCAAAGAGAAGAAcggaaagaagaagaggaagagccTGGCCAAGAGAATCAGAGAGCGATGCTGTATTTTATAGTGGCATGAGGCGTTCTGTTCATCGGCTTCCTTCCCGAGCCCTCCTCCACCTTGCCCATTCctctgggtcgtgttcatttggtaccaaatggaagaaaatggactgaaacagggagggactacctggacttgtctaATAACAATTGCTCATTTTAGCTTTCTGTTGCAAGAAGTTAAAATATCTGTTGCGTTCTGTAATGAACATTACCCAGGTTTCCCTCTCAGAAGCCATGGCCAAGGGAGAGAAAAtcctgtattttttatttattattattatttttaaagatGAGTTCACTAAAGGGGAGTTTGTCATCCAATTATAGTAAACACTAAAATGGTAAGACTACAACTGAAACCAAAAAAGGAATTTGAGGCCACAAATGACAAGACTTTACATTTACTTTCAATTGTAATATTTTATCCCAAGAACAGTAATGACCCCTCTTAAATTATCGTTCTGAGATATAGTCAATTTAGGAAAACTTAAAACGAGTGGCTGGCTCTGACATCTGAGGTATGCCACTGGTGTAGCAGTCACAAACAAAAGATGCTATCGGAACGCTCACGCAATGTTTGCAGTGTGATAGTAAATCACTATAGTCCCATTTTgtatagctcagttggtagagcgtggcgcTTATTACGCCAGTGTAGTGGGTTCGATTtgttcccgggaccacccatacgcACGCATGACCAAGTCACTATGGATAAAAGAGTCTACTAAAAAAAGGGCACATTTATTATATCTCATGGCTAATTTCAAATGCTGCTACATTCAATGTCACTCCAGGATACTCCACTTCACACAGAATAGACATGAAACCTAAGGGTGTTTAATTGAAAGATATTGAATGGGATCCCACAGTCAAACTTAAACTCTCTTGCACTGGAATGTCTCTCTGCCATCTGGTTAGTCTGCTGTGAAATGTGACACTTTGGATCGTGCTATACAGGCCAATGGTAGAGGGGCTTATACTTAACAGGCCAATGGTTGAGGGGCTTATACTATACAGGCCAGTGGTTGAGGGGATTGTACTAAAGATTACACAATAGGCTGTTTTCCTGGACATGTGAATCCTTAGCCACTAAAAATGGGTTTTCAGTTCACACTGAGCCTGCTTTATTGTCCAGCACTAAGCTTAATCggtgtctgggaaaccaggccgATATAGTCGCCTTCATTTAAGAGGATAGTCTTTTGGTGACCATAGTTACATTAATAAGCAAAGGAGGTTGTTTTTAGAAAATTGGcagtgtcttgttttgtctttcagCCTGGCCTAGGTAATCAAGACTGAAAATAGAAAGGAGGAATTTCCAATGACTCCCTAATAAATTAGGTGATAAAATTAGGCCTGTAAGCACAAATCGGTGTCCTGGAAAATGGTTATGACTGGCTACTTCAGTACATTACCATTTAAGACACCAGTACATTCTGTAACGGCCGAGTCCATATTCCACTTGTTTAGATCCTGCTATAAAATATCAGGGGGAATGTGCAGGCCCCTCCATATAACAGAAAATGGGAATCATTCCATTGATTGCAGTTTCTATCCCGTGGATTATGGACTTAAAGCTCAACCCGGCCCCTTAAAAGATCCATCTAAATGAAATTGTACGTATCATCATACACCTCAGAGTATTCCATAACACAACTATCAGTGTGTAGAAAATGCAATTGGAAAATGTAATTTAGGTTTCTATCCCGAGGCACATCTGTATCCCTTTAACtataggcagggtagcctagtggttagagcgttggactagtaaccggaaccGAAATCTGTCGTCCtgcacctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttctcaactgacttgcctagttaaggtaaaaataaaacataCCTTATATCACAGAGGTCCTCTGTATAGTCTGATAAATaacctttttgttttgtttttcggCATGGGTTTTTTTCTGCCGTTTgtgcacaaccccccccccccctcgccgaGTTCTGCGATGACAAAACTGAACGTACTATGCAGACGCCTTAAGGCATTGGGATTTTCTCACAACCCGAAAACCTTGCTGCTAGACAAACGTCTATCGTGCCGTTGAGAGTCAAGGCAAGGCTATACAGACCAATAACCCCGACTGATTGTTCCATGTACTCTCATTTACAATATACACACACTTAAGTAGTTAACATAGACACCTTTTAATTTCAAAATAAGCTACTTTTGATATGAAGACAGTTAACACGGGAAAATGCATTTCAGAAAATGATGGCGTGAACATCCCTAGTTGAGAATCTTCCACGTTAATAACTGTGCTGCGGTGTCATATAGATGGGTGTTTACTCCAGTCCTTGGATGGAATGTACCAATGAACTTGAGGAGACGCACTGAAATGGGAAACTATTGCACCAATGGCCCATTATGCTTAAGGTTCCGtcctgtttgaaaatgtgagaactgacaacgttttttttttttttttaaatgaagttaACAGTCGCACACCGCAAATAATATCTTAGGCTCTGGTCCaatacttttcttttttttaccaaGACAATTATTGTAACCTGGGTCTCGTTCATTAGGCACCGAATGGAATGAAACTGGTGAGGAACTATGAACTTCTCAAATAAGAAAAGACCCGTTTCTCGTTGAAAAACATTTCcattgtgtgccctaatgaacacgccCCCTGGTATCCCATGCTATTGTTCTGTTTGTACGAGGCTTGATATCTAGGAGCAATGACGCTATCATTAAGTCTGTGCCGCCCGCTGCCCTAATGCTGGCCGCTGGTAGCAGAGGTCCTTTCAACTCATAACATGTGGAATAGTGTAAATTGACTGGAAAATTAAGGAAAAGGGGAAATTAAATAACTTACAATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439896 lncRNA upstream 123858 37323560 ~ 37323881 (+) True G2133829
TU2439890 lncRNA upstream 128420 37314721 ~ 37319319 (+) False G2133826
TU2439893 lncRNA upstream 129064 37314721 ~ 37318675 (+) True G2133826
TU2439891 lncRNA upstream 131157 37314721 ~ 37316582 (+) False G2133826
TU2439841 lncRNA upstream 190532 37256782 ~ 37257207 (+) True G2133780
TU2440009 lncRNA downstream 29070 37499871 ~ 37500080 (+) True G2133932
TU2440131 lncRNA downstream 46476 37517277 ~ 37517592 (+) True G2134039
TU2440158 lncRNA downstream 100383 37571184 ~ 37571446 (+) True G2134065
TU2440159 lncRNA downstream 102061 37572862 ~ 37573277 (+) True G2134066
TU2440169 lncRNA downstream 108368 37579169 ~ 37584695 (+) True G2134073
XM_021590089.2 mRNA upstream 4841 37438032 ~ 37442898 (+) False c28h7orf25
XM_021590088.2 mRNA upstream 4841 37438066 ~ 37442898 (+) True c28h7orf25
XM_036966341.1 mRNA upstream 465479 36977174 ~ 36982260 (+) True LOC118944833
trnas-cga-50 mRNA upstream 759919 36687739 ~ 36687820 (+) True trnas-cga-50
trnas-uga-130 mRNA upstream 760078 36687580 ~ 36687661 (+) True trnas-uga-130
XM_036967110.1 mRNA downstream 154697 37625498 ~ 37650985 (+) True LOC110509126
XM_021590094.2 mRNA downstream 204017 37674818 ~ 37694631 (+) True LOC110509125
XM_036966628.1 mRNA downstream 740475 38211276 ~ 38229233 (+) False LOC110509128
XM_036966627.1 mRNA downstream 746382 38217183 ~ 38229238 (+) True LOC110509128
XM_036965973.1 mRNA downstream 821585 38292386 ~ 38526920 (+) False LOC110508247
TU2439594 other upstream 408815 37038653 ~ 37038924 (+) True G2133551
TU2438557 other upstream 922324 36522754 ~ 36525415 (+) True LOC110509112
TU2438499 other upstream 1077772 36365556 ~ 36369967 (+) True G2132611
TU2438402 other upstream 1082745 36339094 ~ 36364994 (+) True G2132519
TU2438299 other upstream 1472607 35973439 ~ 35975132 (+) True LOC110508289
TU2440527 other downstream 498302 37969103 ~ 37969465 (+) True G2134356
TU2440611 other downstream 652595 38123396 ~ 38143819 (+) True G2134434
TU2440932 other downstream 1054874 38525675 ~ 38526926 (+) True LOC110508247
TU2441508 other downstream 1318741 38789542 ~ 38985535 (+) True LOC118944840
TU2441547 other downstream 1376679 38847480 ~ 38848317 (+) True G2135186

Expression Profile