RNA id: XM_036966375.1


Basic Information

Item Value
RNA id XM_036966375.1
length 5965
RNA type mRNA
GC content 0.52
exon number 40
gene id LOC110509123
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37578708 ~ 37645494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCTCCAAGACATACAAATTCAACTGTAGGAGGGGAAAAAGTGAACCGTCACCATGAGTACGGACGCGGAGATGCAAATCTACGGCAAGGCTGCCTTGTACCTTCGTAAACccgagagggagaggatggaggcacAAGCCGCACCCTTTGATTCAAAGAACGCCTGCTATGTGACAGACGTCAAGGAGCTGTACCTTAAGGGCTTGATCACTGGCAGGACAGAGGGAAAGTGTACTGTCAAAGTCACAAATCCTGACGGCACTACAGTGgacaaagagttcaaagAAGCAGACATCTACCAGATGAACCCCCCTAAGTACGACAAGATTGAGGACATGGCCATGATGACCTACCTGAATGAAGCCTCTGTGTTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTCTTCTGTGCCACGGTGAACCCCTACAAGTGGCTCCCCGTGTACGACGAAGTGGTTGTCAACGCCtacagagggaagaagaggatggaggctccaccccatatcttctctgtctctgacaaCGCCTTCCAGTTCATGATGATTGataaggAGAATCAGTCCGTCCTGATTACTGGAGAATCCGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATCCAGTACTTTGCCACCATTGCAGTTTCTGGTGTCAAGAAGGAAGCAGACCCCAGCAAAATGAAGGGGTCTCTTGAAGATCAGATCATTGCAGCTAACCCTCTGCTGGAGTCTTACGGTAATGCCAAGACAGTGAGGAACGACAACTCGTCTCGCTTTGGTAAATTCATCAGGATTCACTTCCAAGGAGGAAAACTGGCTAAAGCTGACATTGAGACCTacctgctAGAGAAGTCCAGAGTGGCCTTCCAGCTGCCCGCTGAGAGAGGCTACCATATCTTCTACCAGATGATGACCAACCACAAACCTGAGCTAGTTGAAATGACACTCATCACCACCAACCCTTACGACTTCCCCATGATCAGCCAGGGTCAGATCAGTGTGGCCAGCATTGACGACAAGGTCGAGCTGGATGCCACCGATGATGCCATTACAATCCTGGGCTTCTCTAACGATGAGAAAATGGCCATCTACAAGCTGACAGGAGCTGTAATGCACCATGGCAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGTCAGACGGAACCGAGGTGGCTGATAAGATCGGCTACCTGCTGGGCCTGAACTCAGCTGAGTTGCTGAAATGTCTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTACGTGACCAAGGGACAGACTGTGCCTCAGGTTTATAATGCAGTCATGGCTTTGGCCAAGTCCATCTATGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAACGAGATGTTGGACACCAAGAATCCAAGGCAGTTCTATATCGGTGTGCTCgatattgctggatttgagatcTTTGATTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCTTGGAACAAGAGGAGTACAAGAAGGAAGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAAGCTTCAGACACTACCTTCAAGAACAAGCTGAACGACCAACATCTTGGCAAAACCAAGGCATATGAGAAACCCAAGCCTGCCAAAGGCAAGGCAGAAGCCCACTTCTCCCTGGTGCACTACGCCGGCACTGTGGACTACAACATCACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGACTCAGTTATTCAGATGTACGGGAAGTCCTCAGTCAAACTGTTGGCTGCCCTGTATCCCGCTGCCCCACCTGAGGATACGACCAAGAAAGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCGTCCCAGTTCAGGGAGAACTTACAAAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATCCACCAGCTCAGGTGTAATGGTGTTCTGGAGGGTATCAGGATCTGCAGAAAGGGCTTCCCCAGCAGAATCATCTATGCTGACTTCAAGCAGAGGTACAAAGTACTGAATGCCAGTGTCATCCCCGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGGTCCATTGATATAAATCACGATGattacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTGTcttggaggagatgagagacgaGAAGCTGGCCGTTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGAAAAGAGTTCACcaagatgatggagaggagAGAAGCTATCTTCACCGTCCAGTACAACATCCGTTCATTCATGAACGTGAAAACCTGGCCATGGATGAAGGTGTACTTCAAGATCAAGCCCCTGCTGAAGAGCGCTGAGACGGAGAAGGAGCTGGCCAACATGAAGGAGAACTTTGACAAGATGAAAACAGACCTGGCCAAGGCTCTGGCCAAGAAGAAGGAGTTGGAGGAGAAGATGGTGTCCATTCTGCAAGAGAAGAACGACCTGGCACTCCAAGTTGCATCTGAATCAGAGAATCTGAACGATGCTGAGGAAAGGTGTGAGGGACTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACAGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGATGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCCTGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGGTCCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAGTCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACATCCCAGCTCCTCAGTAAAATAGAGGATGAACAGTCTCTGGGAGCTCAGCTACAGAAGAAGATCAAGGAACtccaggcCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCTAAGGTTGAGAAGCAGAGAGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTGGAGGAGGCTGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGTGAGGCAGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGTCCGTAGCCGCCGCTCTGCGCAAGAAACAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagtgAGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCCATCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGATCAAGACTAAGAATGATGAGAATGTTCGCCAGATCAACGACATCAGTGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGCCGCCAGCTGGAGGAGAGGGAATCTCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagaggCAGATTGAGGAGGAGGTCAAGGCTAAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGACTGTGACCTCCTGAGGGAGCAGTTTGAGGAAGAGCAGGAGGCCAAGGCAGAGCTGCAACGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAGCGCACAGAAGAGCTGGAGGAGTCGAAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCCAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGGctgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCAAACGCCATGGCCGCCAACCTAGACAAGAAGCAGAGGAACTTTGACAAGGTTCTGGCAGAGTGGAAGCAGAAGTATGAGGAGAGCCAGGCTGAGCTGGAAGGAGCTCAGAAGGAGGTTCGCTCAATGAGCACTGAACTCTTCAAGATGAAGAACTCCTACGAGGAGGCTCTGGATCATCTGGAGActctgaagagagagaacaagaacctGCAACAGGAGATCGGTGACCTAACTGAGCAGATCGGAGAGACTGGCAAGAGCATCCATGAGCTGGAGAAGGCCAAGAAGACCGTGGAGACAGAGAAGTCTGAGATCCAGACTGCTCTGGAGGAGGCTGAGGGAACACTGGAGCACGAGGAATCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGATCAAGGGTGAGGTGGACAGGAAGCTGGCTGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGATGGTTGACTCCATGCAGAGCACCCTGGATTCTGAGGTCAGGAGCAGGAATGATGCCCTGAGGGTGAAGAAGAAAATGGAGGGAGACTTGAACGAGATGGAGGTTCAGCTGAGCCACTCCAACAGGCAGGCCGCTGAGGCCCAGAAACAGCTGAGGAACGTCCAGGGACAGCTCAAGGATGCCCTGTTGCACCTTGATGATGCCGTCCGCGCCGCAGATGACATGAAGGAGCAGGCAGCCATGGTGGAGCGCAGGAACGGTCTGATGGTGGCTGAAATCGAGGAGCTGAGAGTTGCtctggagcagacagagagaggccgcAAAGTGGCTGAGACTGAGCTGGTAGACGCCAGCGAGCGTGTTGGACTGCTGCACTCCCAGAACATCAGCCTTCTGAACTCCAAGAAGAAGCTGGAGTCTGACCTGGTGCAGGtgcagggagaggtggaagaCATTGTCCAGGAGGCCAGGAATGCAGAGGAGAAGGCCAAGAAGGCCATCACTGACGCGGCCATGATGGCtgaggagctgaagaaggagcaggACACCAGTTCTCACCtggagaggatgaagaagaacctGGAGGTCACAGTCAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTTCGTGAGCTCGAGACTGATGTGGAGGCTGAGCAGAGAAGAGGTGTAGATGCGGTCAAGGGAGTCCGCAAGTATGAGCGCAAAGTCAAGGAGCTCACCTACCAGACTGAGGAGGATAAGAAGAATGTTGTCAGACTTCAGGACCTGGTAGATAAGCTGCAGATGAAAGTCAAGGCCTACAAGAGGCAGGCTGAGGAAGCGGAGGAACAAGCCAACGGCCACATGTCTAAGTTCAGGAAGGTTCAGCATGAGCTGGAGGAGGCTGAGGAGCGTGCTGACATCGCTGAGTCTCAAGTCAACAAGCTCAGAGCCAAGACCCGCGACACTGGAAAGGGCAAAGAAGTTGCTGAATAAACAAGACCAAAGTCTTACATCATTTTCCTGTGTTGCATAAAATATGATTTTCACGGTGAAATGTTTAACTTGGATTAAAAACGTGTCGGCTTACATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2440139 lncRNA downstream 54701 37523795 ~ 37524007 (-) True G2134047
TU2440060 lncRNA downstream 175940 37400347 ~ 37402768 (-) True G2133980
TU2440058 lncRNA downstream 180406 37397441 ~ 37398302 (-) True G2133978
TU2440051 lncRNA downstream 190390 37387035 ~ 37388318 (-) True G2133972
TU2440019 lncRNA downstream 249880 37328617 ~ 37328828 (-) True G2133941
TU2440307 lncRNA upstream 33574 37638454 ~ 37638941 (-) True G2134176
TU2440257 lncRNA upstream 43158 37648038 ~ 37691239 (-) True G2134137
TU2440312 lncRNA upstream 45344 37650224 ~ 37694284 (-) True G2134181
TU2440340 lncRNA upstream 90543 37695423 ~ 37695629 (-) True G2134209
TU2440348 lncRNA upstream 94798 37699678 ~ 37699945 (-) True G2134217
XM_021590092.2 mRNA downstream 17498 37546812 ~ 37561210 (-) True inhbab
XM_021590091.2 mRNA downstream 105160 37471456 ~ 37473548 (-) True LOC110509120
XM_036966595.1 mRNA downstream 107864 37337525 ~ 37470844 (-) True fbxl7
XM_021590087.2 mRNA downstream 153513 37337525 ~ 37425195 (-) False fbxl7
XM_036965880.1 mRNA downstream 245220 37314611 ~ 37333488 (-) False impa1
XM_036966776.1 mRNA upstream 161490 37766370 ~ 37995058 (-) False LOC110509127
XM_036966775.1 mRNA upstream 161490 37766370 ~ 37996222 (-) False LOC110509127
XM_036966303.1 mRNA upstream 969837 38574717 ~ 38625443 (-) False LOC110509132
XM_036966302.1 mRNA upstream 969837 38574717 ~ 38625444 (-) False LOC110509132
XM_036966304.1 mRNA upstream 969837 38574717 ~ 38637568 (-) False LOC110509132
TU2439020 other downstream 1021255 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 1315378 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 1328933 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 1328933 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 1353329 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 161838 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 523249 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 914691 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 1400581 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2198915 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile