RNA id: XM_036967110.1


Basic Information

Item Value
RNA id XM_036967110.1
length 6052
RNA type mRNA
GC content 0.52
exon number 41
gene id LOC110509126
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37625498 ~ 37650985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACTTCTGCTTGGTTGTCCCTTCCAACCAGATATAAGGAGTCTGAGGCCCCTGTATCCATGAGTCAGATATCTTCTTCCTCTGTGGATCCTCCAAGACATACAAATTAAACTGTAGGAGGGGAAAAAGTGATCCGGCACCATGAGTACGGACGCGGAGATGCAAATCTACGGCAAGGCTGCCTTGTACCTTCGTAAACccgagagggagaggatggaggcacAAGCCGCACCCTTTGATTCAAAGAACGCCTGCTATGTGACAGACGTCAAGGAGCTGTACCTTAAGGGCTTGATCACTGGCAGGACAGAGGGAAAGTGTACTGTCAAAGTCACAAATGCTGATGGCACTACAGTGgacaaagagttcaaagAAGCAGACATCTACCAGATGAACCCCCCGAAGTACGACAAGATTGAGGACATGGCCATGATGACCTACCTGAATGAAGCCTCTGTGTTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTCTTCTGTGCCACGGTGAACCCCTACAAGTGGCTCCCCGTGTACGACGAAGTGGTTGTCAACGCCtacagagggaagaagaggatggaggctccaccccatatcttctctgtctctgacaaCGCCTTCCAGTTCATGATGATTGataaggAGAATCAGTCCGTCCTGATTACTGGAGAATCCGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATCCAGTACTTTGCCACCATTGCAGTTTCTGGTGTCAAGAAGGAAGCAGACCCCAGCAAAATGAAGGGGTCTCTTGAGGATCAGATCATTGCAGCTAACCCTCTGCTGGAGTCTTACGGTAATGCCAAGACAGTGAGGAACGACAACTCGTCTCGCTTTGGTAAATTCATCAGGATTCACTTCCAAGGAGGAAAACTGGCTAAAGCTGACATTGAGACCTacctgctAGAGAAGTCCAGAGTGGCCTTCCAGCTGCCCGCTGAGAGAGGCTACCATATCTTCTACCAGATGATGACCAACCACAAACCTGAGCTAGTTGAAATGACACTCATCACCACCAACCCTTACGACTTCCCCATGATCAGCCAGGGTCAGATCAGTGTGGCCAGCATTGACGACAAGGTCGAGCTGGATGCCACCGATGATGCCATTACAATCCTGGGCTTCTCTAACGATGAGAAAATGGCCATCTACAAGCTGACAGGAGCTGTAATGCACCATGGCAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGTCAGATGGAACCGAGGTGGCTGATAAAATCGGCTACCTGCTGGGCCTGAACTCAGCTGAGTTGCTGAAATGTCTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTACGTGACCAAGGGACAGACTGTGCCTCAGGTTTATAATGCAGTCATGGCTCTGGCCAAGTCCATCTATGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAACGAGATGTTGGACACCAAGAATCCCAGACAGTTCTATATCGGTGTGCTCgatattgctggatttgagatcTTTGATTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAACAAGAGGAGTACAAGAAGGAGGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAAGCTTCAGACACTACCTTCAAGAACAAGCTGAACGACCAACATCTTGGCAAAACCAAGGCATATGAGAAACCCAAGCCTGCCAAAGGAAAGGCAGAAGCCCACTTCTCCCTGGTGCACTACGCCGGCACTGTGGACTACAACATCACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGACTCAGTTATTCAGATGTACGGGAAGTCCTCAGTCAAACTGTTGGCTGCCCTGTATCCCGCTGCCCCACCTGAGGATACGACCAAGAAAGGAGGCAAGAAGAAGGGTggctccatgcagactgtgtCGTCCCAGTTCAGGGAGAACTTACAAAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATCCACCAGCTCAGGTGTAATGGTGTTCTGGAAGGTATCAGGATCTGCAGAAAGGGCTTCCCCAGCAGAATCATCTATGCTGACTTCAAGCAGAGGTACAAAGTACTGAATGCCAGTGTCATCCCTGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGGTCCATTGATATAAATCACGACGattacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTGTcttggaggagatgagagacgaGAAGCTGGCTGTTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGAAAAGAGTTCACcaagatgatggagaggagAGATGCCATCTTCACCGTCCAGTACAACATCCGTTCATTCATGAATGTGAAAACCTGGCCATGGATGAAGGTGTACTTCAAGATCAAGCCCCTGCTGAAGAGCGCTGAGACGGAGAAGGAGCTGGCCAACATGAAGGAGAACTTTGACAAGATGAAAACAGACCTGGCCAAGGCTCTGGCCAAGAAGAAGGAGTTGGAGGAGAAGATGGTGTCCATGCTACAAGAGAAGAACGACCTGGCACTCCAAGTTGCATCTGAATCAGAGAATCTGAACGATGCTGAGGAAAGGTGTGAGGGACTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAAACGACAGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGATGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCCTGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGTCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGTCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGGTCCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAGTCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACATCCCAGCTCCTCAGTAAAATAGAGGATGAACAGTCTCTGGGAGCTCAGCTACAGAAGAAGATCAAGGAACtccagGCCCGTattgaggagctggaggaggaaatTGAAGCTGAGCGTGCTGCCAGGGCTAAGGTTGAGAAGCAGAGAGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTGGAGGAGGCTGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGTGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGTCCACAGCCGCCGCACTGCGCAAGAAACAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATTGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagtgAGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCCATCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGATCAAGACTAAGAATGATGAGAATGTTCGCCAGATCAACGACATCAGTGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGCCGCCAGCTGGAGGAGAGGGAATCTCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagaggCAGATTGAAGAGGAGGTCAAGGCTAAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGACTGTGACCTCCTGAGGGAGCAGTTTGAGGAAGAGCAGGAGGCCAAGGCAGAGCTGCAACGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAGCGCACAGAAGAGCTGGAGGAGTCCAAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCCAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGGctgcagggagaggtggaggacctCATGATTGACGTTGAAAGAGCAAACGCCATGGCCGCCAACCTAGACAAGAAGCAGAGGAACTTTGACAAGGTTCTGGCAGAGTGGAAGCAGAAGCATGAGGAGGGCCAGGCTGAGCTGGAAGGAGCTCAGAAGGAGGTTCGCTCAATGAGCACTGAACTCTTCAAGATGAAGAACTCCTACGAGGAGGCTCTGGATCATCTGGAGActctgaagagagagaacaagaacctGCAACAGGAGATCGGTGACCTAACTGAGCAGATCGGAGAGACTGGCAAGAGCATCCATGAGCTGGAGAAGGCCAAGAAGACCGTGGAGACAGAGAAGTCTGAGATCCAGACTGCTCTGGAGGAGGCTGAGGGAACACTGGAGCACGAGGAATCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGATCAAGGGTGAGGTGGACAGGAAGCTGGCTGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGATGGTTGACTCCATGCAGAGCACCCTGGATTCTGAGGTCAGGAGCAGGAATGATGCCCTGAGggtgaagaagaagatggagggagacttGAACGAGATGGAGGTTCAGCTGAGCCACTCCAACAGGCAGGCCGCTGAGGCCCAGAAACAGCTGAGGAACGTCCAGGGACAGCTCAAGGATGCCCAACTGCACCTTGATGACGCCGTCCGCGCCGCAGAGGACATGAAGGAGCAGGCAGCCATGGTGGAGCGTAGGAACGGTCTGATGGTGGCTGAAATCGAGGAGCTGAGAGTTGCtctggagcagacagagagaggacgcaAAGTTGCTGAGACTGAACTGGTAGACGCCAGCGAGCGTGTTGGACTGCTGCACTCCCAGAACATCAGCCTTCTGAACTCCAAGAAGAAGCTGGAGTCTGATCTGGTGCAGGtgcagggagaggtggaagaCATTGTCCAGGAGGCCAGGAATGCAGAGGAGAAGGCCAAGAAGGCCATCACTGACGCGGCCATGATGGCtgaggagctgaagaaggagcaggACACCAGTTCTCACCtggagaggatgaagaagaacctGGAGGTCACAGTCAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTTCGTGAGCTCGAGACTGATGTGGAGGCTGAGCAGAGAAGAAGTGTAGATGCGGTCAAGGGAGTCCGCAAGTATGAGCGCAAAGTCAAGGAGCTCACCTACCAGACTGAGGAGGATAAGAAGAATGTTGTCAGACTTCAGGACCTGGTAGATAAGCTGCAGATGAAAGTCAAGGCCTACAAGAGGCAGGCTGAGGAAGCGGAGGAACAAGCCAACGGCCACATGTCTAAGTTCAGGAAGGTTCAGCATGAGCTGGAGGAGGCTGAGGAGCGTGCTGACATCGCTGAGTCTCAAGTCAACAAGCTCAGAGCCAAGACCCGCGACACTGGAAAGGGCAAAGAAGTTGCTGAATAAACAAGACCAAAGTCTTACATCATTTTCCTGTGTTGCATAAAATATGATTTTCACGGTGAAATGTTTAACTTGGATTAAAAACGTGTCGGCTTACATACA

Function

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2440191 lncRNA upstream 25969 37596641 ~ 37599529 (+) True G2134086
TU2440179 lncRNA upstream 36404 37588343 ~ 37589094 (+) True G2134075
TU2440169 lncRNA upstream 40803 37579169 ~ 37584695 (+) True G2134073
TU2440159 lncRNA upstream 52221 37572862 ~ 37573277 (+) True G2134066
TU2440158 lncRNA upstream 54052 37571184 ~ 37571446 (+) True G2134065
TU2440354 lncRNA downstream 61645 37712630 ~ 37713038 (+) True G2134223
TU2440361 lncRNA downstream 69682 37720667 ~ 37720892 (+) True G2134230
TU2440373 lncRNA downstream 89766 37740751 ~ 37740979 (+) True G2134242
TU2440374 lncRNA downstream 91692 37742677 ~ 37742955 (+) True G2134243
TU2440390 lncRNA downstream 108380 37759365 ~ 37759567 (+) True G2134259
XM_036966597.1 mRNA upstream 154697 37447739 ~ 37470801 (+) False LOC110509119
XM_036966598.1 mRNA upstream 154697 37447927 ~ 37470801 (+) False LOC110509119
XM_036966599.1 mRNA upstream 154697 37447927 ~ 37470801 (+) False LOC110509119
XM_036966596.1 mRNA upstream 154697 37448073 ~ 37470801 (+) True LOC110509119
XM_021590089.2 mRNA upstream 182600 37438032 ~ 37442898 (+) False c28h7orf25
XM_021590094.2 mRNA downstream 23833 37674818 ~ 37694631 (+) True LOC110509125
XM_036966628.1 mRNA downstream 560291 38211276 ~ 38229233 (+) False LOC110509128
XM_036966627.1 mRNA downstream 566198 38217183 ~ 38229238 (+) True LOC110509128
XM_036965973.1 mRNA downstream 641401 38292386 ~ 38526920 (+) False LOC110508247
XM_036966728.1 mRNA downstream 883572 38534557 ~ 38549486 (+) True LOC110509131
TU2439594 other upstream 586574 37038653 ~ 37038924 (+) True G2133551
TU2438557 other upstream 1100083 36522754 ~ 36525415 (+) True LOC110509112
TU2438499 other upstream 1255531 36365556 ~ 36369967 (+) True G2132611
TU2438402 other upstream 1260504 36339094 ~ 36364994 (+) True G2132519
TU2438299 other upstream 1650366 35973439 ~ 35975132 (+) True LOC110508289
TU2440527 other downstream 318118 37969103 ~ 37969465 (+) True G2134356
TU2440611 other downstream 472411 38123396 ~ 38143819 (+) True G2134434
TU2440932 other downstream 874690 38525675 ~ 38526926 (+) True LOC110508247
TU2441508 other downstream 1138557 38789542 ~ 38985535 (+) True LOC118944840
TU2441547 other downstream 1196495 38847480 ~ 38848317 (+) True G2135186

Expression Profile