RNA id: TCONS_00055510


Basic Information

Item Value
RNA id TCONS_00055510
length 841
RNA type processed_transcript
GC content 0.49
exon number 5
gene id XLOC_028621
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13551400 ~ 13567516 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGAACAGTGAGCGCGCGCTGCAGGCTAAAGAAATGCTTTCGGTTTTGAAATTTTTTCCAGTGTTTACATTTAGGGTATGCAATATGTATTAAAACGAGTTACTGTAAGACAAGGCTTTCACTTTGCCGAAAACAAATCGAAACGACTTGATTGTTGAGAAGCACGAAACACGCGAACGGGAATCAGCGAGTATCGAAGTAAATACAAGGGTCGAACATCAAGATCCAGAAGCGATTCTCCACATCGCAGGATGCGACTGGCAGGACTGCGCTCTGACCAGTCAGGAATTACTCAGGAACCCCAGTTCATATCCAAAAGGAGAGTGCCATTTTATCCATCTCAGGTATCCAGTTCTTTCCGATGGGAAGGACGTGATCATTCTCAACAGCAGCTGGAGAAGAGCAGGTCTCCAGCTGTCTCACCTGTGCTCAGGGCCACTAGTGCAGAAAGACAGGTGACCCCTCTTGCCCCTAGAGACCCACCAGAGGGCACCACTGCCCCATCTCAACCACCACAAGCAGAAGCAGCTCAGACATCCACCTTCGCAGTACAAAAGCAGAAACAAGCACTAAATGGAATTAACCATGCACTGCGGATGAAAGCAGGCCTGAGGTCAGAGCATCAGAGAAATGGCTTGAACTCCGAATACCAGAGACAGTTCATGTGGAAAACACCTGTAGCCGAATCGCCCCTGCTTGCTGCACATCAGATGTTATACAGTAACAACAGAGCCATCCCACCCTTCAAAACAAACCCAGTGATTATGGAGAGCGAGTACAAGAGAAGTTTCAAAGGATCGCCTCTTCCCAGGCCACCACGCTTGAGGCGAGATGTTGAA

Function

GO:

id name namespace
GO:0046600 negative regulation of centriole replication biological_process
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041210-117 Predicted to enable microtubule binding activity. Predicted to be involved in negative regulation of centriole replication. Predicted to be located in centriole; centrosome; and nucleus. Is expressed in brain; neural tube; pronephric duct; and tail bud. Orthologous to human MDM1 (Mdm1 nuclear protein).

Ensembl:

ensembl_id ENSDART00000134783

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057336 lncRNA downstream 73586 13489763 ~ 13490081 (-) True XLOC_028615
TCONS_00058127 lncRNA downstream 84846 13477229 ~ 13478821 (-) True XLOC_028614
TCONS_00057335 lncRNA downstream 170497 13345672 ~ 13393170 (-) False XLOC_028613
TCONS_00057334 lncRNA downstream 170497 13345672 ~ 13393170 (-) True XLOC_028613
TCONS_00055501 lncRNA downstream 406924 13138005 ~ 13156743 (-) False XLOC_028612
TCONS_00055513 lncRNA upstream 38332 13605607 ~ 13614821 (-) False XLOC_028623
TCONS_00055517 lncRNA upstream 58707 13625982 ~ 13626833 (-) True XLOC_028624
TCONS_00058128 lncRNA upstream 313261 13880536 ~ 13889277 (-) False XLOC_028626
TCONS_00058129 lncRNA upstream 313261 13880536 ~ 13889482 (-) True XLOC_028626
TCONS_00055522 lncRNA upstream 342033 13909308 ~ 13921170 (-) True XLOC_028628
TCONS_00055507 mRNA downstream 14861 13544595 ~ 13548806 (-) True XLOC_028620
TCONS_00055506 mRNA downstream 24953 13535054 ~ 13538714 (-) True XLOC_028619
TCONS_00055505 mRNA downstream 45286 13517446 ~ 13518381 (-) True XLOC_028618
TCONS_00055504 mRNA downstream 53721 13507584 ~ 13509946 (-) True XLOC_028617
TCONS_00055503 mRNA downstream 61118 13499264 ~ 13502549 (-) True XLOC_028616
TCONS_00055511 mRNA upstream 10390 13577665 ~ 13580348 (-) True XLOC_028622
TCONS_00055512 mRNA upstream 38325 13605600 ~ 13614936 (-) False XLOC_028623
TCONS_00055515 mRNA upstream 38548 13605823 ~ 13613148 (-) False XLOC_028623
TCONS_00055514 mRNA upstream 38548 13605823 ~ 13613148 (-) False XLOC_028623
TCONS_00055516 mRNA upstream 42145 13609420 ~ 13614797 (-) True XLOC_028623
TCONS_00055502 other downstream 307854 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055495 other downstream 584768 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055491 other downstream 649497 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 782532 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055465 other downstream 967863 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055533 other upstream 599767 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 609246 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 621252 14188527 ~ 14189659 (-) False XLOC_028638
TCONS_00055543 other upstream 623777 14191052 ~ 14191984 (-) True XLOC_028638
TCONS_00055545 other upstream 630749 14198024 ~ 14205228 (-) True XLOC_028639

Expression Profile

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