RNA id: XM_036966303.1


Basic Information

Item Value
RNA id XM_036966303.1
length 5791
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110509132
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 38574717 ~ 38644750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCAGTTTAATGGATACCCTTTATCATACACCAATGAGCCCATAAATTGTCATCCTCTGTCAAGAAAAATACAGTCTGTCATTGTGATCACAGACAGGATGACAGAAGAACTACCAAACTAAGAGAAACTCTGCAACAGGCTCATTGTGATCACAGACAGAATGACATAAGAACTACCACACTAAGAGAAACTCTGCAACAGGCTCATTGTGATCACAGACAGGATGACAGAAGAACTACCAAACTAAGAGAAACTCTGCAACAGGCTCATTGTGATCACAGACAGGATGACAGAAGAACTACCAAACTAAGAGAAACTCTGCAACAGGCTCATTGTGAtcacagacagaatgacagaagAACTACCACACTAAGAGAAACTCTGCAACAGGCTCATTGTGATCACAGACCGAATGACATAAGAACTACCACACTAAGAGAAACTCTGCAACAGGCTCATTGTGATCACAGAGAGTGTTGTCATGCTCTTAAGAACGGAAAGCTACAATGCGTCCTGGCCTGGGCGTGAATGATGCAGTTCCCATATTTGGCGGGTTGCGATTGGTGGCAGCCAGCGGTGGTATCATTGTTGTAGGACTGCAGGATGTCCTGAGGAAGACACTCCGCACTCTTGCCTCTACTGGGGCCAGTACAGCACGCACAGCAGCTGTCTAGCGTTCACAGCAGGGAGGCGCACGGCAGGGAGGCACGCTCTACACCTCCTATCACCCCCTCGGCCACCTGAGGTGCTGGCCTGGAACGTGGGCTGTGGAGATCCCGTCTTCTCCAACCCCCGTCCTGAAGGGGACCAGAAATTTGACTTTTTGTTTCAGTTTTTGTGTGTTTTGGTTTTTGTCGGCTCTGCTGCATAAGGAAAAAGTGTAAGTGTCAAGAAAGAGAAGACTCCTCTTCTGTActgggagggcagaggagagcaTAGACAACAGAGCCAGGAGTGTGCTCTCCGATTGACCGGACAGACCGTTGACTAGACGGAGAGACGGAGCGGGCATTAACGTCAAGGAGGTCAACCAGGAAAACAAAACTGCTATATTTGGCGAGATATACGCGTCCATTGACACTTTGGCATTCACATTTGGCAATGTAGTGTCTGACTTTCTTATGGGAGATGTGGACAGCCAATCAGGGTTGGGGATCCCACCGACCAGGAGAAGCAGGTCTTCTGAGAATCTCTCTGTGGATTCTGGGAGATGTGTTCCAGAGAAGGATACTGGGTGGAAGAATGACCTAGTGGGCCCAGAGGTGGCGctgtctgaggaggaggaggaggaggatgttgacCTGACGCTGCAGAAGAACGACAGCGGGGTGGAGTCGGCTCTGCTCTATGCCAAGGCCTGGTCTAAGTACACCAAAGATCTGCTGGCCTGGGTCGACAAACGCCTGGGACTGGGACTACATGCCATTCAGGGAGACCTATATCTCTACGTTTAAGAATGACACAGAGTACAGCCAACTCCTCCTGCAGACTGCCACTGCCCTGCAGACCAACAAATTCATGCAGCCGCTGTTGTCCAGAAGGACTGAGCTGGACAAACTGAGGAAAGACCTTAACGAGCAGTGGCAGAGAGAACAGAAAAAAATGCAAGAGTCCGAGGCGGCGCTGCGTAAGGCCCAGTGGGCCCAGACCCAGAGGACAGACGAGTACCAGAAGGCCCAGTCGTCAGCCAGCCGCTCCCAGGAGGAACAGCCCAGACAGCTGGACAAGAAGAGGAAACTGGAGGAGGAGGCTCTACAGAAGgCTGAGGATGCGAGGGACCACTACAGATCCTGTGTAGCTGATGCAGGAGCCAGGAGGGCAGAGCTGGCCAGCACCAAGACAGACATCCTCACTCAGATCAGAGAACTGCTGGCTCAGTGTGACCTCACACTCAAAGCtGTGACCGTCAACTGGTTCCAGCTGCAGCAGGCCCAGACCGTGCCTCTCCCCGGCCACTACCAGGCCCTGTGTGAAAACGCGAAGATGTACGAGCCTGGACAGAAATACGCCGAGTTTGTCAGAAATCTACCCAAAGATCAGATACACATGGAGTCCTTCTCCGTTGACGGACGgtTTGCTTTGTTCAGCAAGCGTTCGCTGGGCAGCACGAGTTCCCATGGTAACTTGTCCCAGGTGTCCCTGACCTCCGATGACGTCCTGAGTGGGGACGAGGTGGACAGTCCCCTGGGGTCGCGACCTGGGAAGAGGTCCAACAGCGCCACAGACATACAAGGTGACTTTAAACGCAGACTACCCAGAACCCCCTCCACTGGCACCATGTCCTCAGCAGACGACCTGGACGAGAGACAACCATACTCAGACAAcggTCTGGGTGAGATGGTGACCGAGGCAGACGGTTCCCCTGGTCCGTTTCGTAACGCCCAGATGTCCAAGGCGTCTCAGACACACAAGCTGAGGAAACTCAGAGCGCCGTCTAAGTGCAGGGAGTGTGACAGTCTGGTGGTTTTCCACGGAGCAGAATGTGAAGAGtgcTCCCTGGCCTGTCATAAGAAGTGTCTGGAGACCCTGGCCATCCAGTGTGGTCATAAGAGGCTGCAGGGAAGACTACAGCTGTTTGGGATAGACTTCACCCAGGCAGCTAAGAACAGCCCAGATGGGATCCCCTTCATCATCAGGAAGTGTACCTCTGAGATCGAGGTCAGAGCACTCAACCTCAAGGGAATCTACCGTGTGAACGGGGCGAAGTCTCGTGTGGAGAAGCTGTGTCAGGCGTTTGAGAACGGCAAGGACCTGGTTGAGCTCTCTGACCTCTCACCCCACGACATCGGCAACGTGCTCAAACTCTACCTGAGACAGTTACCAGAACCGTTGATCCTGTACCGATACTATAATGACTTCATCGGATTGGCCAAGGAGAGCCAGAGGGTGATCATCGAAGAGAAGGCTGTAGCCAGGGCCCTCCAGGACCAGGGGCGGCCAGGGGGAGAACAACCCCGACCAGGGGGCACCCAGCCTGGGGTAGAGGGAGAGCAGCCTCCCCTGAGAACCAGCCAGCCTGGAGGAGACCAGCCCAGTATCAAACTCAATAGAGTCATCTTTAAGATTAGAGACCTGTTACGACAGCTACCGCCTGCAAACTACAAGACTCTACGCTTCCTCATCGCACACCTACACAGAGTGACAGAGCAGGCCGAGGAAAACAAGATGACAGCCAGTAATCTGGGTATTATTTTCGGCCCTACGCTGGTCAAACCACGACAGACTGATGCAGAGGTTTCCCTGTCTTCTCTGGTTGATTACCCTTACCAGGCACTGATGGTGGAGTTGCTGGTACGTCACTTCCAGATGATCTTTGACGTGGCCAGccccgtctcctcctcttcctcctcctcctccacggcGGACCAGACCTCCACCCGACTCACCCTTCAGGAGGAGCAGAGACTCAGCCTTCGCTCCGTCTCCCTGCTCGACATCAAGGAGCAGAGCACCAAAGTCTGCAAGAGACACTCGTCGGTCATCCCATCCTCTCATATCCTAGATGAGGTGAAGACAGGAAGGactggaccagacaggagagaGTTAACAGCCCTGGAGAGGCTCAACGGCGTCGgctctgctgctgctggtggtcCCAAGgtGCAGAGGTCTACCCTTGTGTTTGGCCGTCCCAGCAtcaatctctcctcctctacctcctctacggCCCCTCGGGTCCAACTTCGCTCCCAGCGCTCGAGAATACTGTTCCGACCAATCAGCATGCCCTTGGAGCGCCtgcccctccccaccccctcccagGTCGTTGAGAGGAACGACCAGAACACCAACGACGCCGCCATGTTGGATCCCACCGCTGACTCCATCACGGAGTCGGCCGAGCCGGAGAAGGAAATGCCTCGGATTGGTGAGGGGTCAAGGGTCAGTACCTACTTTATCACACCCTTCAATCCCCAGGCCGTGCAGCGTAGGACCTGGGACAGGAAGTACAAACACTACGATGTCACGCCGCGCACCGCCATGATCATGGCTAATTTACCGCCTGCCGGTGCTGGCCCCGGAACACAGCCGACAGGGAAGCAGCCGACGATGCCGACACAACCATCCGTATCTGGGCCGACTAGCTCTGCTCTCCCATCCAGTGGAAGTGTCGGCACCATATTTTCCAACAGCCCTTACACGTTATCGGTGAAGGCTGGCCAGACGtccagaagagacagagaggagacaaaggACAGGCCTAACTCTGCTGCTGGAGGTGGTGGGGAGACTAGAACCTCTACCAACTCCCCCATAGCGTTCAGACAACCAAGGAATCTGCAGCCTCCGCCCGGAACCTTCTACAAGCCTCCTGGTGGTTCTTCAGCCACGAGAGGCTGGCCATCATCAAGTACCTCTGGTACCACTAGCCCCATCAATATGTCCCCAACTCCTACTGTTAAAACCTCTGCCCCGACCTCTCCTACTGTTAAAACCTCTGCCCCGACCTCTCCTACTGTTAAAACCTCTTCTCCTACTGTTAAAACCTTCCCTCCTACTGTTAAAACCTCTTCCACGACCTCTCCTACTGTTAAAACCTCTTCTCCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCCACCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTACCCCGACCTCTCCTACTGTTACATCCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACCACCTCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTACCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTACCCCGACCTCTCCTACTGTTACATCCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACCACCTCTACTGTTAAAACCTCTTCCCCGACCTCTCCTACTGTTAAAACCTCTTCCCCGACTTCTCCtactgctctcctcctcctcgcttcctcccattcctccaccATTACTTTCTCCTCTACCCCTATGGTTACCACCGCCACCCTTCAGACCTCAAACCTCCCCATACACTGTTCACAGGACTCAGTGGACAGCTCTGTTAGTGTTGACCCCGAGGTTGAGACCTCCGCTGACCTTCTACCTCCCCGGTCCCCTCCCCCCAGCAGCCCAGAGGACCTCAGCCCAACTGAGGCCAAACCGCTGCACCAAAGACTGAGACACCGGCCCAAACCCAGCGCTCCCGGCGAGGCCCACTTTGTCTGAACCGTGATGTCATCGCACACAGCTGGGGAcacagaaaacaacaacaacagccagcAACAGCATTGGCCAAGACTTCCAATGATAATGGTCACGTTCCTGCCCGACGACATTGCAGACGTGTGCCAGATCTCACCACGCCTGAAATAGGTACTGTCAGCTATAACCGCGTCATACGATATAGCCGTCCGGTGCCCAACTGCACAGTCCGTGACGTGGCACACCACCATAGGCAGGCATTACTTTACATCAACCAATCTCTTTCCTCCCTTTGCGTGGCTCTAGGGAAACAGGGGtgattgttgggggggggggaaatcccAACAGTGGCAGTCTTGAATTACTGTTGACGTTTGTAAGCAGGAAGTCTCCCCACTGTGGATGCTGTCATATTGCCGTGTCTCCTTCGACAGACCAAATAAAACAGTTTTTACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2441353 lncRNA downstream 1791 38572524 ~ 38572926 (-) True G2135040
TU2441374 lncRNA downstream 12061 38559618 ~ 38562656 (-) True G2135059
TU2441359 lncRNA downstream 31557 38542529 ~ 38543160 (-) True G2135045
TU2441334 lncRNA downstream 66634 38500884 ~ 38508083 (-) False G2135031
TU2441331 lncRNA downstream 66634 38502632 ~ 38508083 (-) True G2135031
TU2441446 lncRNA upstream 35647 38661090 ~ 38662162 (-) True G2135096
TU2441394 lncRNA upstream 56123 38681566 ~ 38683324 (-) False G2135071
TU2441396 lncRNA upstream 56123 38681566 ~ 38683324 (-) False G2135071
TU2441398 lncRNA upstream 56123 38681566 ~ 38683324 (-) False G2135071
TU2441400 lncRNA upstream 56123 38681566 ~ 38683324 (-) False G2135071
XM_036966775.1 mRNA downstream 578495 37766370 ~ 37996222 (-) False LOC110509127
XM_036966776.1 mRNA downstream 579659 37766370 ~ 37995058 (-) False LOC110509127
XM_036966375.1 mRNA downstream 969837 37578708 ~ 37604880 (-) False LOC110509123
XM_021590092.2 mRNA downstream 1013507 37546812 ~ 37561210 (-) True inhbab
XM_021590091.2 mRNA downstream 1101169 37471456 ~ 37473548 (-) True LOC110509120
XM_036966952.1 mRNA upstream 32361 38657804 ~ 38673221 (-) True LOC110509133
XM_036966895.1 mRNA upstream 59832 38685275 ~ 38702608 (-) True LOC118944870
XM_036965925.1 mRNA upstream 952774 39578217 ~ 39621092 (-) False LOC110509137
XR_005040159.1 mRNA upstream 954251 39579694 ~ 39582446 (-) False LOC118944811
XR_005040164.1 mRNA upstream 954251 39579694 ~ 39582451 (-) False LOC118944811
TU2441345 other downstream 47797 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 444310 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 634874 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 2017264 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 2311387 36263002 ~ 36263330 (-) True G2133007
TU2442402 other upstream 380018 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 1178352 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 1317710 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 1365120 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 1426196 40051639 ~ 40121899 (-) True G2136243

Expression Profile