RNA id: XM_036966952.1



Basic Information


Item Value
RNA id XM_036966952.1
length 948
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110509133
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 38657804 ~ 38673221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATATCAGGCGGTCCACATCTTTCCACTCTCACACTGTGGGACAAACGTGGACAACAAACGGTGGACAAAATGTCGCAGTACTCAGGCAAGATCTGTTTCTACGAGGGGAAATGCTTCACGGGCAGGAAGCTGGAGATCTGCGGTGACTGTGATAACTTCCAGGACCGCGGATTCATGAACCGCGTCAACTCCATCCGCGTGGAGAGCGGCGCCTTCGTCTGCTTCGACCATCCCGACTTCAAGGGCCAGCAGTACATGCTGGAGCACGGAGATTACCCCGAGTTTCAGAGATGGAATGCCCACAATGATCACATGGGCTCCTGCAGACCTATCAGGATGcaTGGAGAACACTACAGGATGGAGTTGTTTGAGGGAGCTGACTTTGCTGACcagtgtgttgaggtgtgtgaTGACGTGCCCTTCCTGCAGGGACGCGGTCTGACCAAGAACTGCATCAACTCTCTGAAGGTTTACGGAGACGGAGCCTGGGTGCTTTATGAGGAACCTAACTTCCGCGGCCGTATGTATATcgtggagagaggagactactCTAGTCACGTGGAGTGGCAGGCCCAGAACCCCAACATCCAGTCCATCCGCAGGGTGGTCAACTACTTCTAAACCACGACCCCTTGACCTCTGACCTTAGTCCGAGGGGTCAAACCTGGGATGTCGAACAGTAAAGGGGCACAACTTTACGGAAAACGTTCAGATGACACAGTCAGTTCTATTCGTGCCATTTGCATCTGTAACATTCTGACCGTGTCACCTCACTGAATGTGATGACATCCCAGGTTAGAGGATACATACATAAATCATACATACATGGATTACAAGGCGGAGCTTGGCGAGGTGTAGTCAACAACGTTTACATCACAGGGCACGGAACTGTTTATTTTATCTTCTAATCCAGTtgtaaaattatataaaaaagaCAGAACCAGAA

Function


GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2441353 lncRNA downstream 84878 38572524 ~ 38572926 (-) True G2135040
TU2441374 lncRNA downstream 95148 38559618 ~ 38562656 (-) True G2135059
TU2441359 lncRNA downstream 114644 38542529 ~ 38543160 (-) True G2135045
TU2441334 lncRNA downstream 149721 38500884 ~ 38508083 (-) False G2135031
TU2441394 lncRNA upstream 8345 38681566 ~ 38683324 (-) False G2135071
TU2441396 lncRNA upstream 8345 38681566 ~ 38683324 (-) False G2135071
TU2441398 lncRNA upstream 8345 38681566 ~ 38683324 (-) False G2135071
TU2441400 lncRNA upstream 8345 38681566 ~ 38683324 (-) False G2135071
TU2441401 lncRNA upstream 8345 38681566 ~ 38683324 (-) False G2135071
XM_036966299.1 mRNA downstream 13054 38574717 ~ 38644750 (-) True LOC110509132
XM_036966300.1 mRNA downstream 13055 38574717 ~ 38644749 (-) False LOC110509132
XM_036966304.1 mRNA downstream 20236 38574717 ~ 38637568 (-) False LOC110509132
XM_036966302.1 mRNA downstream 32360 38574717 ~ 38625444 (-) False LOC110509132
XM_036966303.1 mRNA downstream 32361 38574717 ~ 38625443 (-) False LOC110509132
XM_036966895.1 mRNA upstream 12054 38685275 ~ 38702608 (-) True LOC118944870
XM_036965925.1 mRNA upstream 904996 39578217 ~ 39621092 (-) False LOC110509137
XR_005040159.1 mRNA upstream 906473 39579694 ~ 39582446 (-) False LOC118944811
XR_005040164.1 mRNA upstream 906473 39579694 ~ 39582451 (-) False LOC118944811
XR_005040166.1 mRNA upstream 906473 39579694 ~ 39582459 (-) False LOC118944811
TU2441345 other downstream 130884 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 527397 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 717961 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 2100351 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 2394474 36263002 ~ 36263330 (-) True G2133007
TU2442402 other upstream 332240 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 1130574 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 1269932 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 1317342 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 1378418 40051639 ~ 40121899 (-) True G2136243

Expression Profile