RNA id: XM_036965925.1


Basic Information

Item Value
RNA id XM_036965925.1
length 2173
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC110509137
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39577116 ~ 39621092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATTTGCTCCCGTGGCGTGTGCACGTTCAGTCAGCGACTGACTCGTTCAATAGTATTTCCATCTGTCAGTGACTTCCTGACAACTGTAGCTAAAATATGTCAAAGTTAGAGCAGATTCTTGTTCTCGATCCTCCGTCTGACCTCAGATTTAAAGgtcCTTTTACAGAAGTCATCACCACCAACCTGAAGCTGAAGAACCCGTCTGATAGGAGAGTATGTTTCAAAGTAAAGACCACAGCTCCCAGGAGATACTGTGTACGGCCCAACAGCGGCATCATAGATGCAGGCGCCACCGTCACCATCTCTGTAATGCTCCAGCCCTTTGACTACGACCCCAACGAGAAAAGTAAACACAAATTCATGGTCCAGAGTATCTTTGCTCCTCCTAATGAGTCTGAACTCGATGCTATGtggaAAGATGCGAAACCCGATGACCTCATGGATTCCAAGCTGAGATGTGTATTCGACCTGCCTCCTGAAAACGATAGAGTGAATGACGTGGAAGGGAGCACCGACGTTGCGGCGCCCGTGCAGAACTCGTCCAAGGCGGCGCCCGTGCAGAACTCGTCCAAGGCGGTGGACGTTCCCGTGGCGAAGGCGGCGGCGAAGACGGTCAGCGCCTCGCTGGACGACTCAGAGATGAAGAAACTATCAGAGGAGTGCAGGAGACTGCAGGCTGACATGGGCAAACTGACCGAGGAGAACAGACAACTCAAGGACGACGGTGTTAGAATGAGAAGAGCTGCCCAGCATTCCGATCACATGACATCAAATCAGACAGGCTCTTCCTCCTCCATGATGCAACACACCGCCGCAGCGTCCCTGCCCTCCCTCATCGTCGTCATAGCAGCCATCTTCATCGGCTTCTTCATGGGGAAGTTTATCTTGTAGACTGGGGTTGGCTCTggaatggcaccccattcccctTGACCAGGGCCCTCGTGCGGATGAGtcccgtagggctctggtcaaacggtagtgcactacatggggaatagggtgccatttgggatgttgcGTTCTGAGAGACGCACAACGCCTGCCGTATCCCACGACAATCCCTCTGCTCCGGAATCAAAAGGCCTGGAGGGAACTGACTAGTGAAGATGTATTTCTGTTGACTTAGACATATCAGAAGTAGTGCTGTGAACCTCCATTTGTCTGCAGTGAccatgtctgtctggtctctctgtctgtctggtctctctgtctgtctggtctttgtctgtctgtaccaGGGCCCCGCTGCCTTTTTACAAGGTCTGACACATggctagtacacacacacacacccacacacacacacacacacacacacacacacacacagagagagagggaagggatatTCCTTGATGGATGAACAGACAGGATTGTGGAGGGGTATGATGGTTAtatcctaaatgacaccctattccctatatagtgcactactttagaccaaagccctGTAATGCCCTTGGTACCCTGGTAAAAAGTTAGCGCACTAAAAATGGAATAGGCTGCTATTTAGGACATACAGGAAGAAGTACACTACCAATCAACATGGAGGACAGTTTACcttgcatcccaaacggcacactatcccctatgtagtgcactacttttgataagAGACGCTACTAATTGAGCCCAGGTCTACAGTAGTCTGGTCCTAACCTCCAGTCCTCAGCCCCAGGCTATAGTAGCCTGGTTCTAACCTCCAGTCCTCAGTCCCAGGATATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGTCCCAGGATATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGCCCCAGGCCAGGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGTCCCAGGCCAAGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGCCCCAGGCCAGGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGCCCCAGGCCAGGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGTCCCAGGCCAAGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAATCCCGGGCCAGGAcatagtagcctggtcccagatctgtttgcgcTGTCTGGTTCCTACTCCCTAGTGCTCTAGGGAGTAAGGTATCATTTGACTCCTAGAGTCGCTGTGGGCCTGAAGCAGTGGAATAAACCaagtgttctctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442713 lncRNA downstream 5578 39572343 ~ 39572639 (-) True G2136094
TU2442707 lncRNA downstream 7870 39569571 ~ 39570347 (-) True G2136091
TU2442708 lncRNA downstream 8050 39569393 ~ 39570167 (-) False G2136091
TU2442695 lncRNA downstream 31366 39526974 ~ 39546851 (-) True G2136079
TU2442691 lncRNA downstream 60517 39517285 ~ 39517700 (-) True G2136075
TU2442716 lncRNA upstream 1489 39622581 ~ 39622827 (-) True G2136097
TU2442640 lncRNA upstream 1900 39622992 ~ 39625417 (-) True G2136028
TU2442647 lncRNA upstream 4945 39626037 ~ 39626705 (-) True G2136035
TU2442717 lncRNA upstream 6678 39627770 ~ 39628147 (-) True G2136098
TU2442624 lncRNA upstream 12649 39633741 ~ 39641639 (-) False rab31
XM_036966895.1 mRNA downstream 875609 38685275 ~ 38702608 (-) True LOC118944870
XM_036966952.1 mRNA downstream 904996 38657804 ~ 38673221 (-) True LOC110509133
XM_036966299.1 mRNA downstream 933467 38574717 ~ 38644750 (-) True LOC110509132
XM_036966300.1 mRNA downstream 933468 38574717 ~ 38644749 (-) False LOC110509132
XM_036966304.1 mRNA downstream 940649 38574717 ~ 38637568 (-) False LOC110509132
XM_021590109.2 mRNA upstream 15371 39636463 ~ 39650352 (-) False rab31
XM_021590110.2 mRNA upstream 15371 39636463 ~ 39650366 (-) False rab31
XM_036966346.1 mRNA upstream 93536 39714628 ~ 39717684 (-) False LOC118944836
XM_036966757.1 mRNA upstream 98605 39719697 ~ 39763224 (-) False LOC110509148
XM_036966759.1 mRNA upstream 98605 39719697 ~ 39763224 (-) False LOC110509148
TU2442402 other downstream 572167 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1051297 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1447810 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1638374 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 3020764 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 182703 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 322061 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 369471 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 430547 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 794211 40415303 ~ 40415540 (-) True G2137086

Expression Profile