RNA id: TU2442630


Basic Information

Item Value
RNA id TU2442630
length 1746
lncRNA type read_through
GC content 0.46
exon number 3
gene id LOC110509137
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39577116 ~ 39621092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACAGACAGGATTGTGGAGGGGTATGATGGTTAtatcctaaatgacaccctattccctatatagtgcactactttagaccaaagccctGTAATGCCCTTGGTACCCTGGTAAAAAGTTAGCGCACTAAAAATGGAATAGGCTGCTATTTAGGACATACAGGAAGAAGTACACTACCAATCAACATGGAGGACAGTTTACcttgcatcccaaacggcacactatcccctatgtagtgcactacttttgataagAGACGCTACTAATTGAGCCCAGGTCTACAGTAGTCTGGTCCTAACCTCCAGTCCTCAGCCCCAGGCTATAGTAGCCTGGTTCTAACCTCCAGTCCTCAGTCCCAGGATATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGTCCCAGGATATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGCCCCAGGCCAGGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGCCCCAGGCCAGGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAGTCCCAGGCCAAGACATAGTAGCCTGGTCCTAACCTCCAGTCCTCAATCCCGGGCCAGGAcatagtagcctggtcccagatctgtttgcgcTGTCTGGTTCCTACTCCCTAGTGCTCTAGGGAGTAAGGTATCATTTGACTCCTAGAGTCGCTGTGGGCCTGAAGCAGTGGAATAAACCaagtgttctctgtctgttgtgTTTAATAGTAGTTAAATGGAACGTCAAGTGTCttttgtaaatgttattttaATCATTTTTAAGATAAAAAGGAGAGCACTACTTCTTCAATCGTCAAATACCGACCACCTTTGCTACCTGTTGCATGGCATCCCGGTTCGTTTTATAGTGTGCTACTcgtgaccagagcactatggaccctagtcaaaagtagtgcactacacagggacgCAGCCGTAGACTACTTCATTTGTTCTGTTTGTAATTTCTCTACTTTTCTATTCCATCTCGAGAAATAATAGGtgcctccttccttcctttccttcctccctttcctacctgtcctttcccacctgtcCTTTCCTTTCTCCCTTTCCTACCTGTTCTTTCCTTTCTCCCTTTTCCACCTGTCCTTTCCTACCTGTCCTTTCCTTTCTCCCTTTCCTACCTGTCCTGTCCTTTCCtttctccctttcccacctgtccTTTCCTACCTGTCCTTTCCTTTCTCCCTTTCCTACCTGTTCTTTCCTTTCTCCCTTTTCCACCTGTCCTTTCCTACCTGTCCTTTCCTTTCTCCCTTTCCTACCTGTCCTTTCCtttctccctttcccacctgtcctttcctacCTGCCATTTTCTACCtgtcctttccttcctccctttCCTACCTGTCCTTTCCTTCCTACCTGTCCTTTCCTACCTgtccctttccttccttcctttcccacctgtcctttcctacctgtccctttccttccttcctttcccacCTGTCCTTTCCTACCTGTCCTTTCCTACCTGTCCTTTCCTCCCTGTCCTACCtgtcctttccttcctccctttCCTACCTGTCCTTTCCTACCCTTGACAATACCAATGTAGACTTtacattattatattgttatttttctCAGTACAAATCATATTATAATCCTTCCTTcctctttttcttcttttttttttgagtCAAATGACTTTTGTTGAGTCAACCCTCCCATGGCTTTAAACcgaagaagaaataaaactgaaAACAATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442713 lncRNA downstream 4477 39572343 ~ 39572639 (-) True G2136094
TU2442707 lncRNA downstream 6769 39569571 ~ 39570347 (-) True G2136091
TU2442708 lncRNA downstream 6949 39569393 ~ 39570167 (-) False G2136091
TU2442695 lncRNA downstream 30265 39526974 ~ 39546851 (-) True G2136079
TU2442691 lncRNA downstream 59416 39517285 ~ 39517700 (-) True G2136075
TU2442654 lncRNA upstream 14831 39593857 ~ 39596743 (-) True G2136042
TU2442716 lncRNA upstream 43555 39622581 ~ 39622827 (-) True G2136097
TU2442640 lncRNA upstream 43966 39622992 ~ 39625417 (-) True G2136028
TU2442647 lncRNA upstream 47011 39626037 ~ 39626705 (-) True G2136035
TU2442717 lncRNA upstream 48744 39627770 ~ 39628147 (-) True G2136098
XM_036966895.1 mRNA downstream 874508 38685275 ~ 38702608 (-) True LOC118944870
XM_036966952.1 mRNA downstream 903895 38657804 ~ 38673221 (-) True LOC110509133
XM_036966299.1 mRNA downstream 932366 38574717 ~ 38644750 (-) True LOC110509132
XM_036966300.1 mRNA downstream 932367 38574717 ~ 38644749 (-) False LOC110509132
XM_036966304.1 mRNA downstream 939548 38574717 ~ 38637568 (-) False LOC110509132
XR_005040159.1 mRNA upstream 668 39579694 ~ 39582446 (-) False LOC118944811
XR_005040164.1 mRNA upstream 668 39579694 ~ 39582451 (-) False LOC118944811
XR_005040166.1 mRNA upstream 668 39579694 ~ 39582459 (-) False LOC118944811
XR_005040133.1 mRNA upstream 668 39579694 ~ 39582467 (-) False LOC118944811
XR_005040160.1 mRNA upstream 668 39579694 ~ 39582469 (-) False LOC118944811
TU2442402 other downstream 571066 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1050196 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1446709 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1637273 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 3019663 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 224769 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 364127 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 411537 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 472613 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 836277 40415303 ~ 40415540 (-) True G2137086

Expression Profile